1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtagactttagtctttaccctttatggaaatagcaaaacaccaaaactactgtatgtactttaatttaggatgtactatttgcagGTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAAGAACAACTGGCTGCTTGGGTTGCTGACAAAAAGAACATTAGTGCATATG
species | Zea mays |
transcript | GRMZM2G107696_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TACCTGATTTTATCTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAG GTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAAEST: gi|211002367|gb|FL015700.1|FL015700
genomic: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAGgtagacttta ... ctatttgcagGTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAA
EST: TACCTGATTTTATCTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAG GTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAAEST: gi|32934870|gb|CF039682.1|CF039682
genomic: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAGgtagacttta ... ctatttgcagGTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAA
EST: TACCTGATTTTATCTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAG GTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAAEST: gi|149014868|gb|EE044579.2|EE044579
genomic: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAGgtagacttta ... ctatttgcagGTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAA
EST: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAG GTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAAEST: gi|17970241|gb|BM277005.1|BM277005
genomic: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAGgtagacttta ... ctatttgcagGTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAA
EST: TACCTGATTTTATCTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAG GTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAAEST: gi|76924845|gb|DV170158.1|DV170158
genomic: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAGgtagacttta ... ctatttgcagGTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAA
EST: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAG GTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAAEST: gi|87298812|gb|DY470815.1|DY470815
genomic: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAGgtagacttta ... ctatttgcagGTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAA
EST: TACCTGATTTTATCTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAG GTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAAEST: gi|148962640|gb|EE013533.2|EE013533
genomic: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAGgtagacttta ... ctatttgcagGTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAA
EST: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAG GTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAAEST: gi|18385124|gb|BM418323.1|BM418323
genomic: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAGgtagacttta ... ctatttgcagGTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAA
EST: TACCTGATTTTATCTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAG GTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAAEST: gi|31363710|gb|CD448067.1|CD448067
genomic: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAGgtagacttta ... ctatttgcagGTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAA
EST: TACCTGATTTTATCTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAG GTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAAEST: gi|32929603|gb|CF034415.1|CF034415
genomic: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAGgtagacttta ... ctatttgcagGTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAA
EST: TACCTGATTTTATCTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAG GTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAAEST: gi|50331231|gb|CO526357.1|CO526357
genomic: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAGgtagacttta ... ctatttgcagGTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAA
EST: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAG GTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAAEST: gi|148944899|gb|EC890058.2|EC890058
genomic: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAGgtagacttta ... ctatttgcagGTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAA
EST: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAG GTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAAEST: gi|149109487|gb|EE190226.2|EE190226
genomic: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAGgtagacttta ... ctatttgcagGTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAA
EST: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAG GTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAA
genomic: TACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGATTTGCCAGAGAAGgtagacttta ... ctatttgcagGTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAA
tagcaaaacaccaaaactactgtatgtactttaatttaggatgtactatttgcagGTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAAGAACAACTGGCTGCTTGGGTTGCTGACAAAAAGAACATTAGTGCATATG
ctttaat putative branch site (score: 4)
tatgtactttaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagactttagtctttaccctttatggaaatagcaaaacaccaaaactactgtatgtactttaatttaggatgtactatttgcagGTTAGGCTTGCGGTTGATAAAGTTTTACTTGCTGAAAGTGCTGATAGAAAAGAACAACTGGCTGCTTGGGTTGCTGACAAAAAGAACATTAGTGCATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC