1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttcaatgcttattaccaagcatttgtgatcgttatagttcctatagctttgtgtttgtgtttcagactttttcctttcatttttttggtgttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACGTTACCCAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG
species | Zea mays |
transcript | GRMZM2G107362_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|67018679|gb|CO447428.1|CO447428
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|32843443|gb|CD983124.1|CD983124
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACEST: gi|166525245|gb|EG101803.1|EG101803
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: CTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|5607842|gb|AI901509.1|AI901509
genomic: CTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|16926269|gb|BM079337.1|BM079337
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|110525764|gb|EE029948.1|EE029948
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|211532760|gb|FL372716.1|FL372716
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|86470516|gb|DY236886.1|DY236886
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGTTTTTCGTGAGAGAAGGGTGCACEST: gi|32929081|gb|CF033893.1|CF033893
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGCGAGAGAAGGGTGCACEST: gi|32807039|gb|CD959273.1|CD959273
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|33098406|gb|CF058366.1|CF058366
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|60398374|gb|DN231190.1|DN231190
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGGTCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|60354159|gb|DN221132.1|DN221132
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGGTCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|67016311|gb|CO445060.1|CO445060
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|32796868|gb|CD949104.1|CD949104
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|6827684|gb|AW331327.1|AW331327
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCNCAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|32796810|gb|CD949046.1|CD949046
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|32849637|gb|CD989318.1|CD989318
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGANAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG CCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|211487780|gb|FL049401.1|FL049401
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|5706265|gb|AI942041.1|AI942041
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGTAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|32846355|gb|CD986036.1|CD986036
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|60345693|gb|DN212666.1|DN212666
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|32849664|gb|CD989345.1|CD989345
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|44901517|gb|CK828062.1|CK828062
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|60350083|gb|DN217056.1|DN217056
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|211122652|gb|FL433068.1|FL433068
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|5847445|gb|AW000524.1|AW000524
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTEST: gi|4646865|gb|AI621940.1|AI621940
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCT
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|60355211|gb|DN222184.1|DN222184
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|21809475|gb|BQ667793.1|BQ667793
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACEST: gi|5525808|gb|AI861701.1|AI861701
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
EST: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
agctttgtgtttgtgtttcagactttttcctttcatttttttggtgttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACGTTACCCAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG
tttcattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcaatgcttattaccaagcatttgtgatcgttatagttcctatagctttgtgtttgtgtttcagactttttcctttcatttttttggtgttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACGTTACCCAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - -atgctta
- - - - - - - -ccaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt