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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctaatgcttgggcttctatctgtagtttatagagatcgattgttcatcaactaatccccttttacttactgattgcttgtgcatcaactctttgtgcagGGATCTAAGTCTGATGGTTTAAGGGGCTCAA

Basic information

species Zea mays
transcript GRMZM2G107106_T02
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929362|gb|CF034174.1|CF034174
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAG                         GGATCTAAGTCTGATGGTTTAAGGGGCTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaact ... ctttgtgcagGGATCTAAGTCTGATGGTTTAAGGGGCTCAA
EST: gi|31353283|gb|CD437640.1|CD437640
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAG                         GGATCTAAGTCTGATG
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaact ... ctttgtgcagGGATCTAAGTCTGATG
EST: gi|61119710|gb|DN560671.1|DN560671
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAG                         GGATCTAAGTCTGATGGTTTAAGGGGCTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaact ... ctttgtgcagGGATCTAAGTCTGATGGTTTAAGGGGCTCAA
EST: gi|32929980|gb|CF034792.1|CF034792
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAG                         GGATCTAAGTCTGATGGTTTAAGGGGCTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaact ... ctttgtgcagGGATCTAAGTCTGATGGTTTAAGGGGCTCAA
EST: gi|71313388|gb|DR793244.1|DR793244
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAG                         GGATCTAAGTCTGATGGTTTAAGGGGCTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaact ... ctttgtgcagGGATCTAAGTCTGATGGTTTAAGGGGCTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcaactaatccccttttacttactgattgcttgtgcatcaactctttgtgcagGGATCTAAGTCTGATGGTTTAAGGGGCTCAA
                                           ctctttgt  CT-rich tract
               ttttactta  TA-rich tract