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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattctaatgtatcttcaattggaacattaaaaaaactagttctttcattttcacttatttgcagttttaaattgttttttcttgaatgtacagGAAAACTCGTGAAAGAGGAACTTCCAGAAGAGGAGAAAAACTTTCAAAAGAATTACGTTAAGGCACCATCATTCCTTTCAATTCATATGGGTGTCAAAGC

Basic information

species Zea mays
transcript GRMZM2G106531_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106531_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os11g36440.1 (Oryza sativa), 3'ss of exon 7
--------------------------------------------------------------------------gtaattctaatgtatcttcaattggaa--cattaaaaaaactagttctttcattttcacttatttgcagttttaaattgttt-------------tttcttgaatgtacagGAAAACTCGTGAAAG---AGGAACTTCCAGAAGAGGAGAAAAACTTTCAAAAGAATTACGTTAAGGCACCATCATTCCTTTCAATTCATATGGGTGTCAAAGC
                                                                          | || | | |   | |||   |   ||  ||  |   |   | ||||||   || | | || ||  |   ||  | ||||               || |||  |   | ||| |||||| ||||||   | || ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||   
gtaatcctgcttatctatttttatttgaaaaatatgcggctcgttgaaattcatttgttacaatattatttgctgaaagtttcaca-acctttgctcaaaattcacaactcagttttgttcttgagttattatttgttaaccacttgtacttgtccataaaaataacaattacttctactcaaagGTAAACTCTTGAAAGTTGAAGAGCTTCCAGAAGAGGAGAAAAACTTCCAAAAGAATTATGTTAAAGCACCATCATTCCTTTCCATTCATATGGGTGTCAA---

upper sequence: GRMZM2G106531_T01 (Zea mays), 3'ss of exon 7
lower sequence: AT1G06820.1 (Arabidopsis thaliana), 3'ss of exon 7
----------gtaatt-ctaatgtatct-tcaattggaacattaaaaaaactagttctttca------ttttcacttatttgcagttttaaattgttttttcttgaatgtacagGAAAACTCGTGAAAGAGGAA---CTTCCAGAAGAGGAGAAAAACTTTCAAAAGAATTACGTTAAGGCACCATCATTCCTTTCAATTCATATGGGTGTCAAAGC
            |||  || ||||| || || | | |     |||| |||     | ||| |      || |    ||  || | ||  || |||| ||||  ||    |  ||| || ||  | ||||  |||   |||||  |||| ||  |||| || || ||    ||||| ||||| |||||||| ||||||||||| |||||||| ||   
gtaagagaaaacaatgacttatgtaactgtcgaatagcttcctaaagaaaaagaatattttacaaatcttgttttgtaagtgtacttaaaacttgtattttgctgtgc-tttagGGAAGCTGTTAAAAGGAGAAAAGCTTCCTAAAGAAGAAGAAAATTTCCAGAAAGTGTACGTCAAGGCTCCATCATTTCTTTCAATTCACATGGGTGTTAA---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttctttcattttcacttatttgcagttttaaattgttttttcttgaatgtacagGAAAACTCGTGAAAGAGGAACTTCCAGAAGAGGAGAAAAACTTTCAAAAGAATTACGTTAAGGCACCATCATTCCTTTCAATTCATATGGGTGTCAAAGC
                                    ttttttcttg  CT-rich tract
                          ttttaaattgtttttt  TA-rich tract