1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaagtagagtcaaacagaactctaatatcgtgcaatggaaatatcatgagaacttatcattctttctgttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGTATTGGGAAAAATTCACATATCAGAAAAGCAATCATTGACAAAAATGCTC
species | Zea mays |
transcript | GRMZM2G106213_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAG ACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGTEST: gi|31356186|gb|CD440543.1|CD440543
genomic: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAGgtaaagtaga ... ttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGT
EST: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAG ACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGTEST: gi|31357016|gb|CD441373.1|CD441373
genomic: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAGgtaaagtaga ... ttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGT
EST: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAG ACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGTEST: gi|32929383|gb|CF034195.1|CF034195
genomic: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAGgtaaagtaga ... ttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGT
EST: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGTAGACTATTACGAG ACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGTEST: gi|32934685|gb|CF039497.1|CF039497
genomic: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAGgtaaagtaga ... ttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGT
EST: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGTAGACTATTACGAG ACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGTEST: gi|67042108|gb|CO468363.1|CO468363
genomic: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAGgtaaagtaga ... ttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGT
EST: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAG ACTGAGAATGATAAGAATGCCCTTTCTGAGACTGGTGGCATTCCCATTGGTEST: gi|71301127|gb|DR786596.1|DR786596
genomic: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAGgtaaagtaga ... ttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGT
EST: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAG ACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGTEST: gi|32846616|gb|CD986297.1|CD986297
genomic: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAGgtaaagtaga ... ttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGT
EST: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGTAGACTATTACGAG ACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGCEST: gi|6918472|gb|AW400002.1|AW400002
genomic: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAGgtaaagtaga ... ttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGT
EST: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAG ACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGTEST: gi|110511027|gb|EE019293.1|EE019293
genomic: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAGgtaaagtaga ... ttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGT
EST: GGTGCAGACTATTACGAG ACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGTEST: gi|148950460|gb|EC896030.2|EC896030
genomic: GGTGCAGACTATTACGAGgtaaagtaga ... ttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGT
EST: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAG ACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGTEST: gi|78180055|gb|DV550428.1|DV550428
genomic: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAGgtaaagtaga ... ttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGT
EST: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAG ACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGTEST: gi|60352415|gb|DN219388.1|DN219388
genomic: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAGgtaaagtaga ... ttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGT
EST: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAG ACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGTEST: gi|37381963|gb|CF627890.1|CF627890
genomic: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAGgtaaagtaga ... ttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGT
EST: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAG ACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGTEST: gi|32856251|gb|CD995932.1|CD995932
genomic: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAGgtaaagtaga ... ttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGT
EST: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGTAGACTATTACGAG ACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGTEST: gi|32929486|gb|CF034298.1|CF034298
genomic: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAGgtaaagtaga ... ttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGT
EST: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGTAGACTATTACGAG ACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGTEST: gi|12046285|gb|BF728424.1|BF728424
genomic: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAGgtaaagtaga ... ttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGT
EST: AGGTGCCAG-TATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAG ACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGTEST: gi|211186265|gb|FL114940.1|FL114940
genomic: AGGTG-CAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAGgtaaagtaga ... ttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGT
EST: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAG ACTGAGAATGATAAGAATGCCCTTTCTGAGACTGGTGGCATTCCCATTGGT
genomic: AAGGTGCAGTTATAGAGGACTCTTTGCTAATGGGTGCAGACTATTACGAGgtaaagtaga ... ttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGT
aatatcgtgcaatggaaatatcatgagaacttatcattctttctgttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGTATTGGGAAAAATTCACATATCAGAAAAGCAATCATTGACAAAAATGCTC
ctctaat putative branch site (score: 3)
ttctttctgttttgtt putative PPT
aaatatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagtagagtcaaacagaactctaatatcgtgcaatggaaatatcatgagaacttatcattctttctgttttgttcagACTGAGAATGATAAGAATGTCCTTTCTGAGACTGGTGGCATTCCCATTGGTATTGGGAAAAATTCACATATCAGAAAAGCAATCATTGACAAAAATGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA