1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgaaaacccccctcctagacgaagacgacctcgcaaaggcagatatatagccatcagtcgatgacgattccaggtggctaaacgaccacacagttacctgaccagatgacatggactttgttgcgtgcagGTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCTGCACAGAACAAAGGCCACGCTGATCGGCTTGCTGGAGGCCGGCAGGGCC
species | Zea mays |
transcript | GRMZM2G105631_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAG GTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCTEST: gi|30087456|gb|CB885662.1|CB885662
genomic: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAGgtgaaaaccc ... ttgcgtgcagGTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCT
EST: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAG GTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCTEST: gi|93284005|gb|EB676269.1|EB676269
genomic: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAGgtgaaaaccc ... ttgcgtgcagGTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCT
EST: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAG GTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCTEST: gi|71448756|gb|DR829806.1|DR829806
genomic: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAGgtgaaaaccc ... ttgcgtgcagGTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCT
EST: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAG GTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCTEST: gi|78110271|gb|DV528686.1|DV528686
genomic: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAGgtgaaaaccc ... ttgcgtgcagGTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCT
EST: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAG GTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCTEST: gi|76292862|gb|DV032430.1|DV032430
genomic: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAGgtgaaaaccc ... ttgcgtgcagGTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCT
EST: TCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAG GTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCTEST: gi|29167909|gb|CB411169.1|CB411169
genomic: TCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAGgtgaaaaccc ... ttgcgtgcagGTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCT
EST: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAG GTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCTEST: gi|33467925|gb|CF244974.1|CF244974
genomic: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAGgtgaaaaccc ... ttgcgtgcagGTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCT
EST: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAG GTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAEST: gi|71761578|gb|DR959515.1|DR959515
genomic: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAGgtgaaaaccc ... ttgcgtgcagGTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGA
EST: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAG GTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCTEST: gi|71330488|gb|DR802010.1|DR802010
genomic: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAGgtgaaaaccc ... ttgcgtgcagGTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCT
EST: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAG GTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCTEST: gi|76018154|gb|DT945324.1|DT945324
genomic: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAGgtgaaaaccc ... ttgcgtgcagGTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCT
EST: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAG GTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCTEST: gi|76020765|gb|DT947935.1|DT947935
genomic: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAGgtgaaaaccc ... ttgcgtgcagGTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCT
EST: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAG GTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCTEST: gi|116829022|gb|EC863362.1|EC863362
genomic: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAGgtgaaaaccc ... ttgcgtgcagGTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCT
EST: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAG GTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCTEST: gi|88757584|gb|DY541725.1|DY541725
genomic: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAGgtgaaaaccc ... ttgcgtgcagGTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCT
EST: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAG GTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCT
genomic: GTCTACATCCCCTCGGCCATCACCCTCCTCAACTCTGTCGGCACTCCCAGgtgaaaaccc ... ttgcgtgcagGTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCT
ggctaaacgaccacacagttacctgaccagatgacatggactttgttgcgtgcagGTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCTGCACAGAACAAAGGCCACGCTGATCGGCTTGCTGGAGGCCGGCAGGGCC
acctgac putative branch site (score: 105)
ctttgtt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaaacccccctcctagacgaagacgacctcgcaaaggcagatatatagccatcagtcgatgacgattccaggtggctaaacgaccacacagttacctgaccagatgacatggactttgttgcgtgcagGTCTTTCCACCTGCTTTTCTTCTGGGTCGCCTTCGAGAACGTCATGTCCCTGCACAGAACAAAGGCCACGCTGATCGGCTTGCTGGAGGCCGGCAGGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG