1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agtgagataaattagcatcggatcaatgcgcttatttaggccattggaagacgagaaaaccagcagtgatgaagtttcttgctttaccaaatgttcgcagTACTACCTTGAGAGGAACCTTGAAGCCCGAGAAAGGGAACTTGCCCGCGAGGAAGAGCTCGAGGAGAGAGCCCCCAAAGTAAAAGCCAAGTCCAAGATGT
species | Zea mays |
transcript | GRMZM2G105570_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCATCGAAGTGAAAGATCAGACTATCCAAGACTATCAAGGAGATTACAAT TACTACCTTGAGAGGAACCTTGAAGCCCGAGAAAGGGAACTTGCCCGCGAAEST: gi|149001354|gb|EE038645.2|EE038645
genomic: TCATCGAAGTGAAAGATCAGACTATCCAAGACTATCAAGGAGATTACAATgtgagctgtc ... atgttcgcagTACTACCTTGAGAGGAACCTTGAAGCCCGAGAAAGGGAACTTGCCCGCGAG
EST: TCATCGAAGTGAAAGATCAGACTATCCAAGACTATCAAGGAGATTACAAT TACTACCTTGAGAGGAACCTTGAAGCCCGAGAAAGGGAACTTGCCCGCGAGEST: gi|60343411|gb|DN210384.1|DN210384
genomic: TCATCGAAGTGAAAGATCAGACTATCCAAGACTATCAAGGAGATTACAATgtgagctgtc ... atgttcgcagTACTACCTTGAGAGGAACCTTGAAGCCCGAGAAAGGGAACTTGCCCGCGAG
EST: TCATCGAAGTGAAAGATCAGACTATCCAAGACTATCAAGGAGATTACAAT TACTACCTTGAGAGGAACCTTGAAGCCCGAGAAAGGGAACTTGCCCGCGAG
genomic: TCATCGAAGTGAAAGATCAGACTATCCAAGACTATCAAGGAGATTACAATgtgagctgtc ... atgttcgcagTACTACCTTGAGAGGAACCTTGAAGCCCGAGAAAGGGAACTTGCCCGCGAG
ggaagacgagaaaaccagcagtgatgaagtttcttgctttaccaaatgttcgcagTACTACCTTGAGAGGAACCTTGAAGCCCGAGAAAGGGAACTTGCCCGCGAGGAAGAGCTCGAGGAGAGAGCCCCCAAAGTAAAAGCCAAGTCCAAGATGT
aaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgagataaattagcatcggatcaatgcgcttatttaggccattggaagacgagaaaaccagcagtgatgaagtttcttgctttaccaaatgttcgcagTACTACCTTGAGAGGAACCTTGAAGCCCGAGAAAGGGAACTTGCCCGCGAGGAAGAGCTCGAGGAGAGAGCCCCCAAAGTAAAAGCCAAGTCCAAGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- -gagataaa
- - - - - - - - - - - tcaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgaa