1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gatgaacatatttctgtatataatattggccaatcgacaatctggatcatttcttgaatcgtcttgcatttctacatttttttgtatatatgttctgcagCTGAAACAGCCCCAAGACCTTCATACCCATCTTCAAAGGCGAAAAAAGACTGGGATAAACTGGAAGCTGAAGTCAAAAAGGAG
species | Zea mays |
transcript | GRMZM2G105019_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAAGACTGTTCCCCAGAAGATAAGCACGCCAG CTGAAACAGCCCCAAGACCTTCATACCCATCTTCAAAGGCGAAAAAAGACTEST: gi|67041846|gb|CO468101.1|CO468101
genomic: CAAAGACTGTTCCCCAGAAGATAAGCACGCCAGgtaacaaatc ... tgttctgcagCTGAAACAGCCCCAAGACCTTCATACCCATCTTCAAAGGCGAAAAAAGACT
EST: GATTATAGTGGAAGAACAAAGACTGGTCCCCA-AANGATTAGCACGCCAG CTGAAACAGCCCCAEST: gi|67031272|gb|CO460021.1|CO460021
genomic: GATTATAGTGGAAGACCAAAGACTGTTCCCCAGAA-GATAAGCACGCCAGgtaacaaatc ... tgttctgcagCTGAAACAGCCCCA
EST: GGATTATAGTGGAAGAC-AAAGACTGTTCCCCAGAAGATAAGCACGCCAG CTGAAACAGCCCCAAGAACTTCATACCCATCTTCAAAGGCGAAAAAAGACTEST: gi|22545963|gb|BU098322.1|BU098322
genomic: GGATTATAGTGGAAGACCAAAGACTGTTCCCCAGAAGATAAGCACGCCAGgtaacaaatc ... tgttctgcagCTGAAACAGCCCCAAGACCTTCATACCCATCTTCAAAGGCGAAAAAAGACT
EST: GGATTATAGTGGAAGACCAAAGACTGTTCCCCAGAAGATAAGCACGCCAG CTGAAACAGCCCCAAGAACTTCATACCCATCTTCAAAGGCGAAAAAAGACTEST: gi|6056546|gb|AW090936.1|AW090936
genomic: GGATTATAGTGGAAGACCAAAGACTGTTCCCCAGAAGATAAGCACGCCAGgtaacaaatc ... tgttctgcagCTGAAACAGCCCCAAGACCTTCATACCCATCTTCAAAGGCGAAAAAAGACT
EST: GGATTATAGTGGAAGACCAAAGACTGTTCCCCAGAAGATAAGCACGCCAG CTGAAACAGCCCCAAGACCTTCATACCCATCTTCAAAGGCGAAAAAAGACTEST: gi|6031470|gb|AW076372.1|AW076372
genomic: GGATTATAGTGGAAGACCAAAGACTGTTCCCCAGAAGATAAGCACGCCAGgtaacaaatc ... tgttctgcagCTGAAACAGCCCCAAGACCTTCATACCCATCTTCAAAGGCGAAAAAAGACT
EST: GGATTATAGTGGAAGACCAAAGACTGTTCCCCAGAAGATAAGCACGCCAG CTGAAACAGCCCCAAGACCTTCATACCCATCTTCATAGGCGAAAAAAGACTEST: gi|148995931|gb|EE035174.2|EE035174
genomic: GGATTATAGTGGAAGACCAAAGACTGTTCCCCAGAAGATAAGCACGCCAGgtaacaaatc ... tgttctgcagCTGAAACAGCCCCAAGACCTTCATACCCATCTTCAAAGGCGAAAAAAGACT
EST: GATTATAGTGGAAGACCAAAGACTGTTCCCCAGA-GAATA-GCACGCCAG CTGAAACAGCCCCAAGAACTTCATACCCATCTTCAAAGGCGAAAAEST: gi|5917336|gb|AW054127.1|AW054127
genomic: GATTATAGTGGAAGACCAAAGACTGTTCCCCAGAAGA-TAAGCACGCCAGgtaacaaatc ... tgttctgcagCTGAAACAGCCCCAAGACCTTCATACCCATCTTCAAAGGCGAAAA
EST: GGATTATAGTGGAAGACCAAAGACTGTTCCCCAGAAGATAAGCACGCCAG CTGAAACAGCCCCAAGACCTTCATACCCATCTTCAAAGGCGAAAAAAGACT
genomic: GGATTATAGTGGAAGACCAAAGACTGTTCCCCAGAAGATAAGCACGCCAGgtaacaaatc ... tgttctgcagCTGAAACAGCCCCAAGACCTTCATACCCATCTTCAAAGGCGAAAAAAGACT
atcatttcttgaatcgtcttgcatttctacatttttttgtatatatgttctgcagCTGAAACAGCCCCAAGACCTTCATACCCATCTTCAAAGGCGAAAAAAGACTGGGATAAACTGGAAGCTGAAGTCAAAAAGGAG
atttctacattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgaacatatttctgtatataatattggccaatcgacaatctggatcatttcttgaatcgtcttgcatttctacatttttttgtatatatgttctgcagCTGAAACAGCCCCAAGACCTTCATACCCATCTTCAAAGGCGAAAAAAGACTGGGATAAACTGGAAGCTGAAGTCAAAAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
gatgaac
- - - - - - - - - - - - - - - - - - - - -ctggatc
- - - - - - - - - - - - - - - - - - - - - - - - -tttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttgca