1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaccgacacaagcgtctgacagtttgttgcaaagcactcgtggtttttacataccaagcttatgaactttgtaacctacatgtagGTGGGGAGGTTTGACCCCGTGACCCGTGAGGCTCTTGAACCGCACCAGCTGGTTCCTAATCTTGCCATCAAGGAAGCTGTGCATGCGTTTTTGAGTGAGC
species | Zea mays |
transcript | GRMZM2G104769_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGAGCGGGATTACCTACGAGAGGGCCGTACTTCTCGACCACCTTCAAACG GTGGGGAGGTTTGACCCCGTGACCCGTGAGGCTCTTGAACCGCACCAGCTGEST: gi|161594513|gb|EY963894.1|EY963894
genomic: CGAGCGGGATTACCTACGAGAGGGCCGTACTTCTCGACCACCTTCAAACGgtaaccgaca ... ctacatgtagGTGGGGAGGTTTGACCCCGTGACCCGTGAGGCTCTTGAACCGCACCAGCTG
EST: GAGCGGGATTACCTACGAGAGGGCCGTACTTCTCGACCACCTTCAAAACG GTGGGGAGGTTTGACCCCGTGACCCGTGAGGCTCTTGAACCGCACCAGCTEST: gi|149106375|gb|EE292095.2|EE292095
genomic: GAGCGGGATTACCTACGAGAGGGCCGTACTTCTCGACCACCTTC-AAACGgtaaccgaca ... ctacatgtagGTGGGGAGGTTTGACCCCGTGACCCGTGAGGCTCTTGAACCGCACCAGCT
EST: CGAGCGGGATTACCTACGAGAGGGCCGTACTTCTCGACCACCTTCAAACG GTGGGGAGGTTTGACCCCGTGACCCGTGAGGCTCTTGAACCGCACCAGCTGEST: gi|91054321|gb|EB164739.1|EB164739
genomic: CGAGCGGGATTACCTACGAGAGGGCCGTACTTCTCGACCACCTTCAAACGgtaaccgaca ... ctacatgtagGTGGGGAGGTTTGACCCCGTGACCCGTGAGGCTCTTGAACCGCACCAGCTG
EST: CGAGCGGGATTACCTACGAGAGGGCCGTACTTCTCGACCACCTTCAAACG GTGGGGAGGTTTGACCCCGTGACCCGTGAGGCTCTTGAACCGCACCAGCTGEST: gi|14244851|gb|BG842789.2|BG842789
genomic: CGAGCGGGATTACCTACGAGAGGGCCGTACTTCTCGACCACCTTCAAACGgtaaccgaca ... ctacatgtagGTGGGGAGGTTTGACCCCGTGACCCGTGAGGCTCTTGAACCGCACCAGCTG
EST: CGAGCGGGATTACCTACGAGAGGGCCGTACTTCTCGACCACCTTCAAACG GTGGGGAGGTTTGACCCCGTGACCCGTGAGGCTCTTGAACCGCACCAGCTG
genomic: CGAGCGGGATTACCTACGAGAGGGCCGTACTTCTCGACCACCTTCAAACGgtaaccgaca ... ctacatgtagGTGGGGAGGTTTGACCCCGTGACCCGTGAGGCTCTTGAACCGCACCAGCTG
aaagcactcgtggtttttacataccaagcttatgaactttgtaacctacatgtagGTGGGGAGGTTTGACCCCGTGACCCGTGAGGCTCTTGAACCGCACCAGCTGGTTCCTAATCTTGCCATCAAGGAAGCTGTGCATGCGTTTTTGAGTGAGC
ttgtaac putative branch site (score: 25)
tttttacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaccgacacaagcgtctgacagtttgttgcaaagcactcgtggtttttacataccaagcttatgaactttgtaacctacatgtagGTGGGGAGGTTTGACCCCGTGACCCGTGAGGCTCTTGAACCGCACCAGCTGGTTCCTAATCTTGCCATCAAGGAAGCTGTGCATGCGTTTTTGAGTGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG