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gtgcgtacttcttcttctgcattttaagttcttttctgggaaactctccgtcattgtgataatgaattgttgccatatgccctagtttatcgtgtgcttattggcttgtttgcagTTATCAGACTTGGATGCCATAGATGTTCGAACCCATGGATTTAGTAGGGATGGAATTCCTGAAGCTGGTGACACAGTTCGGATAGATGTGTTTGGAGGCT
species | Zea mays |
transcript | GRMZM2G104449_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGAACTGGAATATCTTACAGAAGATGTCGTACTTGTGATAATGAAAACT TTATCAGACTTGGATGCCATAGATGTTCGAACCCATGGATTTAGTAGGGATEST: gi|149078013|gb|EE166751.2|EE166751
genomic: TTGAACTGGAATATCTTAAAGAAGATGTCGTAATTGTGATAATGAAAACTgtgcgtactt ... ttgtttgcagTTATCAGACTTGGATGCCATAGATGTTCGAACCCATGGATTTAGTAGGGAT
EST: TTGAACTGGAATATCTTAGAGAAGATGTCGTAATTGTGATAATGAAAACT TTATCAGACTTGGATGCCATAGATGTTCGACCCCCTGGATTTAGTAGGGATEST: gi|71429317|gb|DR810367.1|DR810367
genomic: TTGAACTGGAATATCTTAAAGAAGATGTCGTAATTGTGATAATGAAAACTgtgcgtactt ... ttgtttgcagTTATCAGACTTGGATGCCATAGATGTTCGAACCCATGGATTTAGTAGGGAT
EST: TTGAACTGGAATATCTTAAAGAAGATGTCGTAATTGTGATAATGAAAACT TTATCAGACTTGGATGCCATAGATGTTCGAACCCATGGATTTAGTAGGGATEST: gi|76014645|gb|DT941815.1|DT941815
genomic: TTGAACTGGAATATCTTAAAGAAGATGTCGTAATTGTGATAATGAAAACTgtgcgtactt ... ttgtttgcagTTATCAGACTTGGATGCCATAGATGTTCGAACCCATGGATTTAGTAGGGAT
EST: TTGAACTGGAATATCTTAAAGAAGATGTCGTAATTGTGATAATGAAAACT TTATCAGACTTGGATGCCATAGATGTTCGAACCCATGGATTTAGTAGGGAT
genomic: TTGAACTGGAATATCTTAAAGAAGATGTCGTAATTGTGATAATGAAAACTgtgcgtactt ... ttgtttgcagTTATCAGACTTGGATGCCATAGATGTTCGAACCCATGGATTTAGTAGGGAT
aatgaattgttgccatatgccctagtttatcgtgtgcttattggcttgtttgcagTTATCAGACTTGGATGCCATAGATGTTCGAACCCATGGATTTAGTAGGGATGGAATTCCTGAAGCTGGTGACACAGTTCGGATAGATGTGTTTGGAGGCT
cttgttt CT-rich tract
tagtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtacttcttcttctgcattttaagttcttttctgggaaactctccgtcattgtgataatgaattgttgccatatgccctagtttatcgtgtgcttattggcttgtttgcagTTATCAGACTTGGATGCCATAGATGTTCGAACCCATGGATTTAGTAGGGATGGAATTCCTGAAGCTGGTGACACAGTTCGGATAGATGTGTTTGGAGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG