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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgttacttcaagcattatgtctttatttacacagcctcacctacacaacatcccatacttcctaagggcttgtgtggctgcaccctaatccacatggatagattggagtgcagccaaacaagttttttttataacttcaatggctactaacgagctactgatattctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGG

Basic information

species Zea mays
transcript GRMZM2G104418_T01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91050181|gb|EB160599.1|EB160599
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTTTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|71307229|gb|DR789781.1|DR789781
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|76012012|gb|DT939182.1|DT939182
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|5922431|gb|AW055720.1|AW055720
EST:     TTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTGCTGAT
genomic: TTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|32807350|gb|CD959584.1|CD959584
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAGGTACTATTGAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|78123325|gb|DV541709.1|DV541709
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|60347811|gb|DN214784.1|DN214784
EST:     CAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|31361649|gb|CD446006.1|CD446006
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTGAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|67015522|gb|CO444271.1|CO444271
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGGCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTGAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|67025519|gb|CO454268.1|CO454268
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGGCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTGAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|76292035|gb|DV031603.1|DV031603
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|211366578|gb|FK956887.1|FK956887
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|76283841|gb|DV023409.1|DV023409
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|94475015|gb|EB703973.1|EB703973
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTGTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|211366579|gb|FK956888.1|FK956888
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTAGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTC
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTC
EST: gi|94480097|gb|EB709055.1|EB709055
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTGTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTTTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|91050182|gb|EB160600.1|EB160600
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|76283840|gb|DV023408.1|DV023408
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|78123326|gb|DV541710.1|DV541710
EST:     CTTGGTGCAGTCTCAAACACAGCTTCACACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGAACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|211181861|gb|FL474507.1|FL474507
EST:     ACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: ACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|32809734|gb|CD961968.1|CD961968
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTGAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|211149407|gb|FL321987.1|FL321987
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttttttttataacttcaatggctactaacgagctactgatattctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCATGGCATGGGG
                                         tattctcccttc  CT-rich tract
     tttttataacttcaat  TA-rich tract