1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...aacaatcaagtgacgaaagtaagatttctcttgattatttttatttctttcttggttgaagcagcccctcatagttgaccttacatttttcatcgtgtagGTTCTGTTTAAGCATTTGCAAGAAAAACTTATTATTACTGAG
species | Zea mays |
transcript | GRMZM2G104377_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACCTTCAGCCTCCTGTTCTTGATGCTCAGTCTATTGGTAGCAATCTGAAG GGTCTGTTTAAGCATTTGCAAGAAAAACTTATTATTACTGAGEST: gi|22490477|gb|BU050400.1|BU050400
genomic: ACCTTCAGCCTCCTGTTCTTGATGCTCAGTCTATTGTTAGCAATCTGAAGgtatgttctg ... catcgtgtagGTTCTGTTTAAGCATTTGCAAGAAAAACTTATTATTACTGAG
EST: ACCTTCAGCCTCCTGTTCTTGATGCTCAGTCTATTGTTAGCAATCTGAAG GTTCTGTTTAAGCATTTGCAAGAAAAACTTATTATTACTGAGEST: gi|32930925|gb|CF035737.1|CF035737
genomic: ACCTTCAGCCTCCTGTTCTTGATGCTCAGTCTATTGTTAGCAATCTGAAGgtatgttctg ... catcgtgtagGTTCTGTTTAAGCATTTGCAAGAAAAACTTATTATTACTGAG
EST: ACCTTCAGCCTCCTGTTCTTGATGCTCAGTCTATTGTTAGCAATCTGAAG GTTCTGTTTAAGCATTTGCAAGAAAAACTTATTATTACTGAG
genomic: ACCTTCAGCCTCCTGTTCTTGATGCTCAGTCTATTGTTAGCAATCTGAAGgtatgttctg ... catcgtgtagGTTCTGTTTAAGCATTTGCAAGAAAAACTTATTATTACTGAG
tctttcttggttgaagcagcccctcatagttgaccttacatttttcatcgtgtagGTTCTGTTTAAGCATTTGCAAGAAAAACTTATTATTACTGAG
accttac putative branch site (score: 39)
tttttcatc CT-rich tract
ttacattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaatcaagtgacgaaagtaagatttctcttgattatttttatttctttcttggttgaagcagcccctcatagttgaccttacatttttcatcgtgtagGTTCTGTTTAAGCATTTGCAAGAAAAACTTATTATTACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - gaaagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacattt