Sequence
atgc intronic sequence ATGC exonic sequence...ctatgtatatatgcatggtgatcagccttctatgtaaatttcgtactgcatcaaatgtgtatcttctcagtttatcagcgctttgtttcttgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCATGACTATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G104147_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os11g09140.2 (Oryza sativa), 3'ss of exon 7
ctatgtatatatgcatggtgat-cagccttctatgtaaatttcgtactgcatcaaatgtgtatcttctcagtttatcagcgctttgtttcttgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCATGACTATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGA
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cttaattttctttcacaatgttgctgtcttcaagaaacaattgatgccttatggaaagtttatttcctcaatttgtgatagcatagtttatt-acgtgcagGATTGGGATCGACAAAATCCAACACAAATTGTCACGGAGCTGTGTGGTTTTGTGACCATCCTTTCTGGGACATTTCTCCTCCACAAGACAAAGGACATGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78108967|gb|DV527384.1|DV527384EST: ACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAG GATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTC
genomic: ACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAGgtaacccatt ... tgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgcatcaaatgtgtatcttctcagtttatcagcgctttgtttcttgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCATGACTATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGA
tcttgat putative branch site (score: 4)
ctttgtttctt CT-rich tract
agtttat TA-rich tract