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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctatgtatatatgcatggtgatcagccttctatgtaaatttcgtactgcatcaaatgtgtatcttctcagtttatcagcgctttgtttcttgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCATGACTATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGA

Basic information

species Zea mays
transcript GRMZM2G104147_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104147_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os11g09140.2 (Oryza sativa), 3'ss of exon 7
ctatgtatatatgcatggtgat-cagccttctatgtaaatttcgtactgcatcaaatgtgtatcttctcagtttatcagcgctttgtttcttgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCATGACTATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGA
|| | | | || || | | | |||| | | | || | | || || || ||| | |||| ||| | | || | |||| || | |||||||||||||| | |||||||||||||||||||| || ||| ||||||| || |||| ||||| |||||||| ||||| || ||||||||||| || ||||
cttaattttctttcacaatgttgctgtcttcaagaaacaattgatgccttatggaaagtttatttcctcaatttgtgatagcatagtttatt-acgtgcagGATTGGGATCGACAAAATCCAACACAAATTGTCACGGAGCTGTGTGGTTTTGTGACCATCCTTTCTGGGACATTTCTCCTCCACAAGACAAAGGACATGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78108967|gb|DV527384.1|DV527384
EST:     ACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAG                         GATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTC
genomic: ACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAGgtaacccatt ... tgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcatcaaatgtgtatcttctcagtttatcagcgctttgtttcttgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCATGACTATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGA
                                          tcttgat  putative branch site (score: 4)
 ctttgtttctt  CT-rich tract
 agtttat  TA-rich tract