1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaggaccaaatgtggtgctccctctcatacccttaggttttgtataaaaaagatcttttaggatgaaaataatgcactactatgccatttgggagacatttccattttggctggtaaaggtataattcggctgcaaactgttgttttagGAGGCCCGAGGAAAGTAGTATCGAAGTGGAGTCAGGACCAAGCACTGTTTGAATCATGGAGAGATGGTCGAACTGG
species | Zea mays |
transcript | GRMZM2G103897_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTACTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGG GAGGCCCGAGGAAAGTAGTATCGAAGTGGAGTCAGGACCAAGCACTGTTTGEST: gi|110957435|gb|EE177487.1|EE177487
genomic: CTACTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGGgtaaggacca ... gttgttttagGAGGCCCGAGGAAAGTAGTATCGAAGTGGAGTCAGGACCAAGCACTGTTTG
EST: CTACTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGG GAGGCCCGAGGAAAGTAGTATCGAAGTGGAGTCAGGACCAAGCACTGTTTGEST: gi|13149731|gb|BG320053.1|BG320053
genomic: CTACTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGGgtaaggacca ... gttgttttagGAGGCCCGAGGAAAGTAGTATCGAAGTGGAGTCAGGACCAAGCACTGTTTG
EST: CTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGG GAGGCCCGAGGAAAKTAKTATCGAAGTGGAGTCAGGACCAAGCACTGTTTG
genomic: CTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGGgtaaggacca ... gttgttttagGAGGCCCGAGGAAAGTAGTATCGAAGTGGAGTCAGGACCAAGCACTGTTTG
gacatttccattttggctggtaaaggtataattcggctgcaaactgttgttttagGAGGCCCGAGGAAAGTAGTATCGAAGTGGAGTCAGGACCAAGCACTGTTTGAATCATGGAGAGATGGTCGAACTGG
ttgtttt CT-rich tract
tataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggaccaaatgtggtgctccctctcatacccttaggttttgtataaaaaagatcttttaggatgaaaataatgcactactatgccatttgggagacatttccattttggctggtaaaggtataattcggctgcaaactgttgttttagGAGGCCCGAGGAAAGTAGTATCGAAGTGGAGTCAGGACCAAGCACTGTTTGAATCATGGAGAGATGGTCGAACTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG