1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtgcatcttttacagcaagcaaccatgcgttgtttccccccgtaacattaatttcttcgatcgccatgcctttcaacatcctaaaaaaaaacatttcttcgatcgccatgcctttcaacatcatcatcataaaaaaaaagcatttcttcgccgtgctgcgcagAAGGATCGCCCCGACGCTGCTGCTGGACGTCCCGCTCGACTCCGCGATGATGAAGGAGGAGATCTTCGGGCCGCTGCTTCCCATAATCACG
species | Zea mays |
transcript | GRMZM2G103546_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCAGATCGACGAGCGGCGGCT AAGGATCGCCCCGACGCTGCTGCTGGACGTCCCGCTCGACTCCGCGATGGAEST: gi|148972862|gb|EE023861.2|EE023861
genomic: CCAGATCGACGAGCGGCGGCTgtgagtgcat ... tgctgcgcagAAGGATCGCCCCGACGCTGCTGCTGGACGTCCCGCTCGACTCCGCGAT-GA
EST: ATCGACGAGCGGCGGTT AAGGATCGCCCCGACGCTGCTGCTGGACGTCCCGCTCGACTCCGCGATGATEST: gi|78082053|gb|DV510465.1|DV510465
genomic: ATCGACGAGCGGCGGCTgtgagtgcat ... tgctgcgcagAAGGATCGCCCCGACGCTGCTGCTGGACGTCCCGCTCGACTCCGCGATGAT
EST: TCGGTCTCCGGCAATGTCGCGTTCGGCGGCCAGATCGACGAGCGGCGGCT AAGGATCGCCCCGACGCTGCTGCTGGACGTCCCGCTCGACTCCGCGATGATEST: gi|71439164|gb|DR820214.1|DR820214
genomic: TCGGTCTCCGGCAATGTCGCGTTCGGCGGCCAGATCGACGAGCGGCGGCTgtgagtgcat ... tgctgcgcagAAGGATCGCCCCGACGCTGCTGCTGGACGTCCCGCTCGACTCCGCGATGAT
EST: TCGGTCTCCGGCAATGTCGCGTTCGGCGGCCAGATCGACGAGCGGCGGCT AAGGATCGCCCCGACGCTGCTGCTGGACGTCCCGCTCGACTCCGCGATGAT
genomic: TCGGTCTCCGGCAATGTCGCGTTCGGCGGCCAGATCGACGAGCGGCGGCTgtgagtgcat ... tgctgcgcagAAGGATCGCCCCGACGCTGCTGCTGGACGTCCCGCTCGACTCCGCGATGAT
tgcctttcaacatcatcatcataaaaaaaaagcatttcttcgccgtgctgcgcagAAGGATCGCCCCGACGCTGCTGCTGGACGTCCCGCTCGACTCCGCGATGATGAAGGAGGAGATCTTCGGGCCGCTGCTTCCCATAATCACG
atcatcataaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgcatcttttacagcaagcaaccatgcgttgtttccccccgtaacattaatttcttcgatcgccatgcctttcaacatcctaaaaaaaaacatttcttcgatcgccatgcctttcaacatcatcatcataaaaaaaaagcatttcttcgccgtgctgcgcagAAGGATCGCCCCGACGCTGCTGCTGGACGTCCCGCTCGACTCCGCGATGATGAAGGAGGAGATCTTCGGGCCGCTGCTTCCCATAATCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT