1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagaccattcctgcagtttgtgacagcatattctgcctgaagctcaatgtctgcctgagcacatatctgcagtttgtgacagcatattcttctgtcgacagGCAACAACCTGGTGGAATGCCGCCTCCGCCCCCACCGCGGAGGGGTAGTGACCGAAGAGACAGTGGCAGAGGTGGCGAAGGGCACAGCCGGCGATATCGC
species | Zea mays |
transcript | GRMZM2G103430_T05 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGAGGATGGTGCCGATGGTGCTTCCTGATGGCCGCCTTGGCTATGTTCT GCAACAACCTGGTGEST: gi|20811268|gb|BQ295746.1|BQ295746
genomic: ATGAGGATGGTGCCGATGGTGCTTCCTGATGGCCGCCTTGGCTATGTCCTgtaagaccat ... ctgtcgacagGCAACAACCTGGTG
EST: ATGAGGATGGTGCCGATGGTGCTTCCTGATGGCCGCCTTGGCTATGTCCT GCAACAACCTGEST: gi|40336436|gb|CK370506.1|CK370506
genomic: ATGAGGATGGTGCCGATGGTGCTTCCTGATGGCCGCCTTGGCTATGTCCTgtaagaccat ... ctgtcgacagGCAACAACCTG
EST: ATGAGGATGGTGCCGATGGTGCTTCCTGATGGCCGCCTTGGCTATGTTCT GCAACAACCTGGTGGAATGCCGCCTCCGCCCCCACCGCGGAGGGGTAGTGAEST: gi|211350823|gb|FL045987.1|FL045987
genomic: ATGAGGATGGTGCCGATGGTGCTTCCTGATGGCCGCCTTGGCTATGTCCTgtaagaccat ... ctgtcgacagGCAACAACCTGGTGGAATGCCGCCTCCGCCCCCACCGCGGAGGGGTAGTGA
EST: ATGAGGATGGTGCCGATGGTGCTTCCTGATGGCCGCCTTGGCTATGTTCT GCAACAACCTGGTGGAATGCCGCCEST: gi|67033789|gb|CO462538.1|CO462538
genomic: ATGAGGATGGTGCCGATGGTGCTTCCTGATGGCCGCCTTGGCTATGTCCTgtaagaccat ... ctgtcgacagGCAACAACCTGGTGGAATGCCGCC
EST: ATGANGATGGTGCCGATGGTGCTTCCTGATGGCCGCCTTGGCTATGTCCT GCAAACA-CCTGGTGGAATGCCGCCTCCGCCCCCACCGNNCG-AGGG-TAG
genomic: ATGAGGATGGTGCCGATGGTGCTTCCTGATGGCCGCCTTGGCTATGTCCTgtaagaccat ... ctgtcgacagGCAA-CAACCTGGTGGAATGCCGCCTCCGCCCCCACCG--CGGAGGGGTAG
atgtctgcctgagcacatatctgcagtttgtgacagcatattcttctgtcgacagGCAACAACCTGGTGGAATGCCGCCTCCGCCCCCACCGCGGAGGGGTAGTGACCGAAGAGACAGTGGCAGAGGTGGCGAAGGGCACAGCCGGCGATATCGC
ttcttctgtc CT-rich tract
atattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaccattcctgcagtttgtgacagcatattctgcctgaagctcaatgtctgcctgagcacatatctgcagtttgtgacagcatattcttctgtcgacagGCAACAACCTGGTGGAATGCCGCCTCCGCCCCCACCGCGGAGGGGTAGTGACCGAAGAGACAGTGGCAGAGGTGGCGAAGGGCACAGCCGGCGATATCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA