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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttcttaggacatgttatcatttgatagaagacatcaatctgatcttttatattaatatgttttatacactgccatcttttactgtgatttccttacagGATGCTTGGTGATCTTGCGGGCAACCATTCTTATTTAAATGTCATAGGAGCGTGGGCAAACCTTTCAGTGTT

Basic information

species Zea mays
transcript GRMZM2G103033_T04
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211450628|gb|FL309615.1|FL309615
EST:     CAAGGACCTATTCCAAAAAATTTCTCTAATCTGAGCAATCTTGAAGTCCT                         GATGCTTGGTGATCTTGCGGGCAACCATTC
genomic: CAAGGACCTATTCCAAAAAATTTCTCTAATCTGAGCAATCTTGAAGTCCTgtaagtcact ... ttccttacagGATGCTTGGTGATCTTGCGGGCAACCATTC
EST: gi|211258292|gb|FL356006.1|FL356006
EST:     CAAGGACCTATTCCAAAAAATTTCTCTAATCTGAGCAATCTTGAAGTCCT                         GATGCTTGGTGATCTTGCGGGCAACTATTCTTATTTAAATGTCATAGGAGC
genomic: CAAGGACCTATTCCAAAAAATTTCTCTAATCTGAGCAATCTTGAAGTCCTgtaagtcact ... ttccttacagGATGCTTGGTGATCTTGCGGGCAACCATTCTTATTTAAATGTCATAGGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttatattaatatgttttatacactgccatcttttactgtgatttccttacagGATGCTTGGTGATCTTGCGGGCAACCATTCTTATTTAAATGTCATAGGAGCGTGGGCAAACCTTTCAGTGTT
      tattaat  putative branch site (score: 2)
                                            tttccttac  putative PPT
     atattaatatgtttta  TA-rich tract