1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagttcacggcttgttttcatctgttacaactacatatttcaattgatatatttactttgcaatcatacaatctttgatgctcttttttagACGCTCCGCGCTCGTGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTGTACATTCAGTGGACTGAGCATCATAAAAGGCTGTCCAATTTCTTAA
species | Zea mays |
transcript | GRMZM2G102475_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGCGACAGCAGGAACGTGAGCAAATTGCAGAGAAGCGTAAGCGTGATATG ACGCTCCGCGCTCGTGTAGCTGCNTA-GGCAGAAGAAAAGAGGTTGGAGCTEST: gi|149026687|gb|EE046096.2|EE046096
genomic: TGCGACAGCAGGAACGTGAGCAAATTGCAGAGAAGCGTAAGCGTGATATGgtaagttcac ... tcttttttagACGCTCCGCGCTCGTGTAGCTGC-TAAGGCAGAAGAAAAGAGGTTGGAGCT
EST: TGCGACAGCAGGAACGTGAGCAAATTGCAGAGAAGCGTAAGCGTGATATG ACGCTCCGCGCTCGTGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGEST: gi|149045935|gb|EE047933.2|EE047933
genomic: TGCGACAGCAGGAACGTGAGCAAATTGCAGAGAAGCGTAAGCGTGATATGgtaagttcac ... tcttttttagACGCTCCGCGCTCGTGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTG
EST: TGCGACAGCAGGAACGTGAGCAAATTGCAGAGAAGCGTAAGCGTGATATG ACGCTCCGCGCTCGTGTAGCTGC
genomic: TGCGACAGCAGGAACGTGAGCAAATTGCAGAGAAGCGTAAGCGTGATATGgtaagttcac ... tcttttttagACGCTCCGCGCTCGTGTAGCTGC
atttcaattgatatatttactttgcaatcatacaatctttgatgctcttttttagACGCTCCGCGCTCGTGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTGTACATTCAGTGGACTGAGCATCATAAAAGGCTGTCCAATTTCTTAA
tgctctttttt CT-rich tract
aattgatatatttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcacggcttgttttcatctgttacaactacatatttcaattgatatatttactttgcaatcatacaatctttgatgctcttttttagACGCTCCGCGCTCGTGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTGTACATTCAGTGGACTGAGCATCATAAAAGGCTGTCCAATTTCTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA