Sequence
atgc intronic sequence ATGC exonic sequencegtgccttatcctgagacatctgcggaagattttattttcttgatgttttctcctgtctcctattgttctgatcttgatttgttttcaatgtttcatgatgaacagGTCAACATTTCACTGAATGCTGCTATTTGTCGACTAAAGCAGACAAGAGAAGAGAGGGACCAGTTTCATGAAGCAAACAATCAGATGATATTTACTTTAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G102196_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g06270.1 (Oryza sativa), 3'ss of exon 9
gtgccttatcctgagacatctgcggaagattttattttcttgatgtt-ttctcctgtctcctattgttctgatcttgatttgttttcaatgtttcatgatgaacagGTCAACATTTCACTGAATGCTGCTATTTGTCGACTAAAGCAGACAAGAGAAGAGAGGGACCAGTTTCATGAAGCAAACAATCAGATGATATTTACTTTAC
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------tggagttacatttctgctgaattgtttctataagaattattattgttctgcttaaggttgacattaggtttgtgttctttctatatctctccaccaacagGTCAACATTTCACTGAATGCTGCCATTGGACGTCTCAAGCAAACAAGGGAAGAGAGGGATCAATTTGATGAAGCAAACAATCAAATGATATTTAGTTTAA
upper sequence: GRMZM2G102196_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA20G38530.1 (Glycine max), 3'ss of exon 11
gtgccttatcctgagacatctgcggaagattttattttcttgatgttttctcctgtctcctattgttctgatcttgatttgttttcaa-tgtttcatgatgaacagGTCAACATTTCACTGAATGCTGCTATTTGTCGACTAAAGCAGACAAGAGAAGAGAGGGACCAGTTTCATGAAGCAAACAATCAGATGAT-ATTTACTTTAC
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-tgattccactttaataatctatgggatgctgttggttggtggagc-----catgaatcctgtaactagatttataaataattgaaacctggcttctgaggtgtagGTTAGCACTACTTTGGCTGCTGCTCAAGCACGACTATGGAATGTGAGGGAAGAGAGAGACCAGTTTGAAGAAGCAAACAATCAGATAGTTGAACACCTGA-
upper sequence: GRMZM2G102196_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA10G43840.1 (Glycine max), 3'ss of exon 11
----gtgccttatcctgagacatctgcggaagattttattttcttgatgttttctcctgtctcctattgttctgatcttgatttgttttcaa--tgtttcatgatgaacagGTCAACATTTCACTGAATGCTGCTATTTGTCGACTAAAGCAGACAAGAGAAGAGAGGGACCAGTTTCATGAAGCAAACAATCAGATGAT-ATTTACTTTAC
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aatgactcctcactttaata-atctatggggtatt-------gttggtggatccg--tgaagcct-ttaacttgatttataaataattgaaacctggcttctgaggtgtagGTTAGCACTACTTTGGCTGCTGCTCAAGCACGACTATGGAATGTGAGGGAAGAGAGAGACCAGTTTGAGGAAGCAAACAATCAGATAGTTGAACACCTGA-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60347043|gb|DN214016.1|DN214016EST: TTTCTGAATTGGAGAAGCAAAAGGATGAACTTGAGGCTCAGTTAAAGAAG GTCAACATTTCACTGAATGCTGCTATTTGTCGACTAAAGCAGACAAGAGAA
genomic: TTTCTGAATTGGAGAAGCAAAAGGATGAACTTGAGGCTCAGTTAAAGAAGgtgccttatc ... tgatgaacagGTCAACATTTCACTGAATGCTGCTATTTGTCGACTAAAGCAGACAAGAGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcctgtctcctattgttctgatcttgatttgttttcaatgtttcatgatgaacagGTCAACATTTCACTGAATGCTGCTATTTGTCGACTAAAGCAGACAAGAGAAGAGAGGGACCAGTTTCATGAAGCAAACAATCAGATGATATTTACTTTAC
atttgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgccttatcctgagacatctgcggaagattttattttcttgatgttttctcctgtctcctattgttctgatcttgatttgttttcaatgtttcatgatgaacagGTCAACATTTCACTGAATGCTGCTATTTGTCGACTAAAGCAGACAAGAGAAGAGAGGGACCAGTTTCATGAAGCAAACAATCAGATGATATTTACTTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG