Sequence
atgc intronic sequence ATGC exonic sequence...cactgatgccatgcgatgttttttcattggctagtaaacaaggtaaagcatatgaagctatctcacttcatcacccttttctatcattccatgtcatcagAGCCCATGCTAACCATAGGGAGCATCAACCCTGTCATGTGGTCCGATGACTGGACCGCAGTGACAGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G101438_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g52420.3 (Oryza sativa), 3'ss of exon 9
------cactgatgccatgcgatgttttttcattggctagtaaa----caaggtaaagcatatgaagctatctcacttcatcacccttttctatcattccatgtcatcagAGCCCATGCTAACCATAGGGAGCATCAACCCTGTCATGTGGTCCGATGACTGGACCGCAGTGACAGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACAC--
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acttagaaatgatgatatcatgtcttagactattgtcttctgaagttttttcgtgaagcatgtaaagctgaca-acctccccattctttttt-----------ttattagagCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTGGACAGCGGTGACTGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACACAA
upper sequence: GRMZM2G101438_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g52420.2 (Oryza sativa), 3'ss of exon 9
-cactgatgccatgcgatgttttttcattggctagtaaacaaggtaaagcat--atgaagctatctcacttcatcacccttttctatcattccatgtcatcagAGCCCATGCTAACCATAGGGAGCATCAACCCTGTCATGTGGTCCGATGACTGGACCGCAGTGACAGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACAC
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acacttagaaatgatgatatcatgtcttagactattgtcttctgaagttttttcgtgaagc-atgtaaagctgacaacctccccattctttt--ttttattagAGCCCATGCTAACCGTGGGGAGCGTAAATCCAGTTATATGGTCCGATGACTGGACAGCGGTGACTGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211033592|gb|FL452207.1|FL452207EST: AGGAAACAATGAATGGGGACGTATGATGTTGAATCAAACATTTACTATAG AGCCCATGCTAACCATAGGGAGCATCAACCCTGTCATGTGGTCCGATGACT
genomic: AGGAAACAATGAATGGGGACGTATGATGTTGAATCAAACATTTACTATAGgtacaccttt ... atgtcatcagAGCCCATGCTAACCATAGGGAGCATCAACCCTGTCATGTGGTCCGATGACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagcatatgaagctatctcacttcatcacccttttctatcattccatgtcatcagAGCCCATGCTAACCATAGGGAGCATCAACCCTGTCATGTGGTCCGATGACTGGACCGCAGTGACAGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACAC
atctcac putative branch site (score: 3)
ttttctat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cactgatgccatgcgatgttttttcattggctagtaaacaaggtaaagcatatgaagctatctcacttcatcacccttttctatcattccatgtcatcagAGCCCATGCTAACCATAGGGAGCATCAACCCTGTCATGTGGTCCGATGACTGGACCGCAGTGACAGAAGACGGCAGCTTGTCAGCACAGTTTGAGCACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT