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gtatgtaatttctgagtaaccaagcttttaaacagatgcacatatttttttattatctttatcttaaaaaacaacattcagtttatcgataagctgtattgtcttaatttgtatgcgtaacagatctggtaatcaaaacgaactcttgttccaactactatacttacgacatttaatctttgaagGGATCATGCAGACAAGTTCAAGTTTGGTGTAGTTAGACAGTTTGTTGGCCATGGGGTTGGCAAAGTTTTTCATGCTGAGCCTGTTGTGCTTCATTTCAGT
species | Zea mays |
transcript | GRMZM2G101438_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCGATTTGTTCACCTGGGGTGGAGATCAAACAAATTGGTAGAACTATACA GGATCATGCAGACAAGTTCAAGTTTGGTGTAGTTAGACAGTTTGTTGGCCAEST: gi|76912468|gb|DV164746.1|DV164746
genomic: TCGATTTGTTCACCTGGGGTGGAGATCAAACAAATTGGTAGAACTATACAgtatgtaatt ... atctttgaagGGATCATGCAGACAAGTTCAAGTTTGGTGTAGTTAGACAGTTTGTTGGCCA
EST: CGATTTGTTCACCTGGGGTGGAGATCAAACAAATTTGGTAGAACTATACA GGATCATGCAGACAAGTTTTAAGTTTGGTGTAGTTAGACAGTTTTGTTGGCEST: gi|101399011|gb|EB821378.1|EB821378
genomic: CGATTTGTTCACCTGGGGTGGAGATCAAACAAATT-GGTAGAACTATACAgtatgtaatt ... atctttgaagGGATCATGCAGACAAGTTC-AAGTTTGGTGTAGTTAGACAGTTT-GTTGGC
EST: TCGATTTGTTCACCTGGGGTGGAGATCAAACAAATTGGTAGAACTATACA GGATCATGCAGACAAGTTTAAGTTTGGTGTAGTTAGACAGTTTGTTGGCCAEST: gi|76289409|gb|DV028977.1|DV028977
genomic: TCGATTTGTTCACCTGGGGTGGAGATCAAACAAATTGGTAGAACTATACAgtatgtaatt ... atctttgaagGGATCATGCAGACAAGTTCAAGTTTGGTGTAGTTAGACAGTTTGTTGGCCA
EST: TCGATTTGTTCACCTGGGGTGGAGATCAAACAAATTGGTAGAACTATACA GGATCATGCAGACNAGTTCAAGTTTGGTGTAGTTAGACAGTTTGTTGGCCA
genomic: TCGATTTGTTCACCTGGGGTGGAGATCAAACAAATTGGTAGAACTATACAgtatgtaatt ... atctttgaagGGATCATGCAGACAAGTTCAAGTTTGGTGTAGTTAGACAGTTTGTTGGCCA
aatcaaaacgaactcttgttccaactactatacttacgacatttaatctttgaagGGATCATGCAGACAAGTTCAAGTTTGGTGTAGTTAGACAGTTTGTTGGCCATGGGGTTGGCAAAGTTTTTCATGCTGAGCCTGTTGTGCTTCATTTCAGT
tcttt CT-rich tract
atttaatctttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtaatttctgagtaaccaagcttttaaacagatgcacatatttttttattatctttatcttaaaaaacaacattcagtttatcgataagctgtattgtcttaatttgtatgcgtaacagatctggtaatcaaaacgaactcttgttccaactactatacttacgacatttaatctttgaagGGATCATGCAGACAAGTTCAAGTTTGGTGTAGTTAGACAGTTTGTTGGCCATGGGGTTGGCAAAGTTTTTCATGCTGAGCCTGTTGTGCTTCATTTCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG