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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttgttttggaatttatcatgtgggaatacatgcaaaagttactcccgtttccctcacaaatatatctcacgtatgatggtttttgctgttgcttgcagGCTGACCACCCCAAACTGAACTTCAAAGACAAGTATTCAGAGCCTTACAGAGACGCTCATCCCACTGCACCTGTTGTCGTGCCGTGGATGTCTGGTGTCA

Basic information

species Zea mays
transcript GRMZM2G101412_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101412_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g52410.1 (Oryza sativa), 3'ss of exon 6
atttgttttggaatttatcatgtgggaat-acatgcaaaagttactcccgtttccctcaca-aatatatctcacgtatgatggtttttgctgttgcttgcagGCTGACCACCCCAAACTGAACTTCAAAGACAAGTATTCAGAGCCTTACAGAGACGCTCATCCCACTGCACCTGTTGTCGTGCCGTGGATGTCTGGTGTCA
 |    |    |||  | ||  |||| ||    | |   |||  ||     |  | | | |   | ||| ||   | | ||| |  ||     |||||||||||||||||||| ||||| |||||||||||||||||||| ||| | ||||||||  ||||||||||||| ||||| || ||||| |||||||| |||||||
ctaaaatacttaatgaaacacctgggcattgtttactgtagtgtctgagagtgtcatgaaatggtttatttcttctcttatgatggtt--caatgcttgcagGCTGACCACCCTAAACTCAACTTCAAAGACAAGTATTCCGAGTCATACAGAGATTCTCATCCCACTGCCCCTGTCGTTGTGCCCTGGATGTCAGGTGTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|1590784|gb|AA072446.1|AA072446
EST:     TCTCGCCAGACAAATATGAGCATAAACATCAGGAGTGCTGGTTGAAACAG                         GCTGACCACCCCAAACTGAACTTCAAAGACAAGTATTCAGAGCCTTAC-GA
genomic: TCTCGCCAGACAAATATGAGCATAAACATCAGGAGTGCTGGTTGAAACAGgtagtgcatg ... ttgcttgcagGCTGACCACCCCAAACTGAACTTCAAAGACAAGTATTCAGAGCCTTACAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccgtttccctcacaaatatatctcacgtatgatggtttttgctgttgcttgcagGCTGACCACCCCAAACTGAACTTCAAAGACAAGTATTCAGAGCCTTACAGAGACGCTCATCCCACTGCACCTGTTGTCGTGCCGTGGATGTCTGGTGTCA
                    atctcac  putative branch site (score: 3)
            acaaatatat  TA-rich tract