Sequence
atgc intronic sequence ATGC exonic sequence...catcattatagatgccaaagctccaatcattggtcggcagattgtttcaccagatttaagttttgagtgaatgtattgattttacattgatccataacagGAGTTGAGTGCTGAAGATGAACGCAGCAGAGGAAAATGTCCACTGACTCCTCATGAAGTCGGGTTAATGCTCCGAGCTCTTGGTTTTGGCAACGATACAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G101181_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g46570.1 (Oryza sativa), 3'ss of exon 7
-catcattatagatgccaaagctccaatcattggtc-ggcagattgtttcaccagatttaagttttgagtgaatgtattgattttacattgatccataacagGAGTTGAGTGCTGAAGATGAACGCAGCAGAGGAAAATGTCCACTGACTCCTCATGAAGTCGGGTTAATGCTCCGAGCTCTTGGTTTTGGCAACGATACAC
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tggctgctgttagttctgagtgtccatgtattcttttgatcaattagtaccgatggatcaatatttgaatga-tgaaatgattt-agactgattcctagcagGAGTTGAGCGCTGAGGATGAGCGCAGTAGGGGCAAATGTCCACTGACTCCTCAAGAAATTGGTTTGATGCTCCGAGCTCTTGGTTTTAGCAATGACACGT
upper sequence: GRMZM2G101181_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 7
------catcattatagatgccaaagctccaatcattg-gtcggcagattgtttcaccagatttaagttttgagtgaatgtattgattttacattgatccataacagGAGTTGAGTGCTGAAGATGAACGCAGCAGAGGAAAATGTCCACTGACTCCTCATGAAGTCGGGTTAATGCTCCGAGCTCTTGGTTTTGGCAACGATACAC
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aggtgccatgcttatgaagatcaaa-ccatagtcattataaccatatatcctgcaaccagaagcaaattttg--tactcccctttactt---atttcttctta-cagGATCTAAGCCCTGAGGGGGAACGAAAGCGAGGAAAATGTCCACTGACTCCTCATGAGGTGGGTTTGATGCTGCGGGCACTTGGCTTTGGAAATGAAACAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcaccagatttaagttttgagtgaatgtattgattttacattgatccataacagGAGTTGAGTGCTGAAGATGAACGCAGCAGAGGAAAATGTCCACTGACTCCTCATGAAGTCGGGTTAATGCTCCGAGCTCTTGGTTTTGGCAACGATACAC
aatgtattgatttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catcattatagatgccaaagctccaatcattggtcggcagattgtttcaccagatttaagttttgagtgaatgtattgattttacattgatccataacagGAGTTGAGTGCTGAAGATGAACGCAGCAGAGGAAAATGTCCACTGACTCCTCATGAAGTCGGGTTAATGCTCCGAGCTCTTGGTTTTGGCAACGATACAC
- - - - - gatgcca
- - - - - - - - - agctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaatg