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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catcattatagatgccaaagctccaatcattggtcggcagattgtttcaccagatttaagttttgagtgaatgtattgattttacattgatccataacagGAGTTGAGTGCTGAAGATGAACGCAGCAGAGGAAAATGTCCACTGACTCCTCATGAAGTCGGGTTAATGCTCCGAGCTCTTGGTTTTGGCAACGATACAC

Basic information

species Zea mays
transcript GRMZM2G101181_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101181_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g46570.1 (Oryza sativa), 3'ss of exon 7
-catcattatagatgccaaagctccaatcattggtc-ggcagattgtttcaccagatttaagttttgagtgaatgtattgattttacattgatccataacagGAGTTGAGTGCTGAAGATGAACGCAGCAGAGGAAAATGTCCACTGACTCCTCATGAAGTCGGGTTAATGCTCCGAGCTCTTGGTTTTGGCAACGATACAC
       | |   | |  |   ||||   |||  |  |    |||  | |    |  | ||  ||||| ||| || | |||||| | | |||| | || ||||||||||| ||||| ||||| ||||| || || |||||||||||||||||||| ||| | || || ||||||||||||||||||||| |||| || ||  
tggctgctgttagttctgagtgtccatgtattcttttgatcaattagtaccgatggatcaatatttgaatga-tgaaatgattt-agactgattcctagcagGAGTTGAGCGCTGAGGATGAGCGCAGTAGGGGCAAATGTCCACTGACTCCTCAAGAAATTGGTTTGATGCTCCGAGCTCTTGGTTTTAGCAATGACACGT

upper sequence: GRMZM2G101181_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 7
------catcattatagatgccaaagctccaatcattg-gtcggcagattgtttcaccagatttaagttttgagtgaatgtattgattttacattgatccataacagGAGTTGAGTGCTGAAGATGAACGCAGCAGAGGAAAATGTCCACTGACTCCTCATGAAGTCGGGTTAATGCTCCGAGCTCTTGGTTTTGGCAACGATACAC
      |||  ||||  |   |||| |   | |||||    |   | ||  |   ||||||   || |||||  |       || | ||   |||  | | || |||||  | ||  |||| |  ||||| |   |||||||||||||||||||||||||||| || || || ||||| || || ||||| ||||| || || ||| 
aggtgccatgcttatgaagatcaaa-ccatagtcattataaccatatatcctgcaaccagaagcaaattttg--tactcccctttactt---atttcttctta-cagGATCTAAGCCCTGAGGGGGAACGAAAGCGAGGAAAATGTCCACTGACTCCTCATGAGGTGGGTTTGATGCTGCGGGCACTTGGCTTTGGAAATGAAACAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaccagatttaagttttgagtgaatgtattgattttacattgatccataacagGAGTTGAGTGCTGAAGATGAACGCAGCAGAGGAAAATGTCCACTGACTCCTCATGAAGTCGGGTTAATGCTCCGAGCTCTTGGTTTTGGCAACGATACAC
                        aatgtattgatttta  TA-rich tract