1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gcgagcccttatatgtccctggtattttgattgctacggattgtggtatgtacaagcttgatgctggatcgtagattcattactttgcagAGTCATGGACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACCATTCAG
species | Zea mays |
transcript | GRMZM2G100652_T04 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTTATGTTGGACGCTTAGGAGTTGAGAAAAGCTTGGATTTTCTTAAGAG AGTCATGGACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACCEST: gi|211491629|gb|FL429938.1|FL429938
genomic: TTTTATGTTGGACGCTTAGGAGTTGAGAAAAGCTTGGATTTTCTTAAGAGgcgagccctt ... tactttgcagAGTCATGGACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACC
EST: TTTTATGTTGGACGCTTAGGAGTTGAGAAAAGCTTGGATTTTCTTAAGAG AGTCATGGACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACCEST: gi|211368674|gb|FL393824.1|FL393824
genomic: TTTTATGTTGGACGCTTAGGAGTTGAGAAAAGCTTGGATTTTCTTAAGAGgcgagccctt ... tactttgcagAGTCATGGACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACC
EST: TTTTATGTTGGACGCTTAGGAGTTGAGAAAAGCTTGGATTTTCTTAAGAG AGTCATGGACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACC
genomic: TTTTATGTTGGACGCTTAGGAGTTGAGAAAAGCTTGGATTTTCTTAAGAGgcgagccctt ... tactttgcagAGTCATGGACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACC
acggattgtggtatgtacaagcttgatgctggatcgtagattcattactttgcagAGTCATGGACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACCATTCAG
gcttgat putative branch site (score: 5)
ttacttt putative PPT
attcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgagcccttatatgtccctggtattttgattgctacggattgtggtatgtacaagcttgatgctggatcgtagattcattactttgcagAGTCATGGACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACCATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA