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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttataatatatatattttttcctggagaagcatttgcataataaaaatgttaatgtttaaacagGAGGGAGCATTCAGCAGGAAAAGAAGCTTTCGCAACAAACTAAAGAAGCAAGCATTACAAAAACGCGAAGCACTGCTATCTTGATAGCGTGACTCACTAT

Basic information

species Zea mays
transcript GRMZM2G100043_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100043_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os09g21520.1 (Oryza sativa), 3'ss of exon 6
--------------gttataatatatatatt-------ttttcctgga------gaagcatttgcataataaaa-atgttaatgtttaaacagGAGGGAGCATTCAGCAGGAAAAGAAGCTTTCGCAACAAACTAAAGAAGCAAGCATTACAAAAACGCGAAGCACTGCTATCTTGATAGCGTGACTCACTAT
              || || ||   |  | |       | ||||| ||      ||| |||    | |  ||   || |  ||||||   ||||||  |||||||||||| ||||| ||||| ||||||||  | ||||||||||||||||| |||     |||| |  ||||||||||  ||||    || |
gtaagcttcatatagtcatcatcctttcactgataacatcttcctagaaacaatgaaacatgcttacagaaagctatctatatgtttgttcagGAGAAAGCATTCAGCAGAAAAAGGAGCTTCCGCAACAAGTTGAAGAAGCAAGCATTACATAAATCTACAGCATTATTATCTTGATATTGTGATATTCTCT

upper sequence: GRMZM2G100043_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA08G40250.1 (Glycine max), 3'ss of exon 5
----------------------------------gttataatatatatattttttcctggaga-agcatttgcataataaaaatgttaatgtttaaacagGAGGGAGCATTCAGCAGGAAAAGAAGCTTTCGCAACAAACTAAAGAAGCAAGCATTACAAAAACGCGAAGCACTGCTATCTTGATAGCGTGACTCACTAT
                                   ||| | | |||| ||  ||    |     |  || ||   | ||| |||    || ||   ||||||    ||||| ||||||||||||||||| |||||||| || ||||||   |                                                
gagttaactatggactgaataatttcacacataatttaaactctataaatcattgatggattccaatatatgtggagtaataattgccattttaccacagGAAACTGCATTTAGCAGGAAAAGAAGCTTCCGCAACAAGCTCAAGAAGAGGG------------------------------------------------

upper sequence: GRMZM2G100043_T02 (Zea mays), 3'ss of exon 7
lower sequence: EFJ30891 (Selaginella moellendorffii), 3'ss of exon 7
gttataatatatatattttttcctggagaagcatttgcataataaaaa---tgttaatgtttaaacagGAGGGAGCATTCAGCAGGAAAAGAAGCTTTCGCAACAAACTAAAGAAGCAAGCATTACAAAAACGCGAAGCACTGCTATCTTGATAGCGTGACTCACTAT
       ||  | | || | | |||   | || ||     |   |||    | ||||  ||    ||||||||||| ||||||||||||||||| || || ||||| || || ||| ||                                                 
------gtactt-tcttatatgctgttcatgcgttccttcatctaaaggtcttttaaaattattgcagGAGGGAGCTTTCAGCAGGAAAAGAAGTTTCCGGAACAAGCTTAAAAAGAAA-------------------------------------------------

upper sequence: GRMZM2G100043_T02 (Zea mays), 3'ss of exon 7
lower sequence: EFJ17282 (Selaginella moellendorffii), 3'ss of exon 7
gttataatatatatattttttcctggagaagcatttgcataataaaaatgttaatgtttaaacagGAGGGAGCATTCAGCAGGAAAAGAAGCTTTCGCAACAAACTAAAGAAGCAAGCATTACAAAAACGCGAAGCACTGCTATCTTGATAGCGTGACTCACTAT
       ||  ||||| || | |  | |   | ||    ||| |    | ||||  ||    ||||||||||| ||||||||||||||||| || || ||||| || || ||| ||                                                 
------gtacttatatgttgttcatgcgttcc-ttcatctaa-aggtcttttaaaattattgcagGAGGGAGCTTTCAGCAGGAAAAGAAGTTTCCGGAACAAGCTTAAAAAGAAA-------------------------------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatattttttcctggagaagcatttgcataataaaaatgttaatgtttaaacagGAGGGAGCATTCAGCAGGAAAAGAAGCTTTCGCAACAAACTAAAGAAGCAAGCATTACAAAAACGCGAAGCACTGCTATCTTGATAGCGTGACTCACTAT
                                      tgttaat  putative branch site (score: 3)
                      atttgcataataaaaa  TA-rich tract