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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtggggccatcgtttgattaatcgcccctccctcataataatgtgtacgtgtccaatgtgattgccttttattttggccgggaaacaccatgtgatggaatgcgtgtatggtgtgtgccttcaatttgcagGCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTTGACTTGACCCTGTATCATGTAATTTGTATGCCAATCATTTGCAGTGATA

Basic information

species Zea mays
transcript GRMZM2G099980_T02
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60349637|gb|DN216610.1|DN216610
EST:     GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAG                         GCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
genomic: GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAGgtaggtgggg ... caatttgcagGCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
EST: gi|5895715|gb|AW036961.1|AW036961
EST:     GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAG                         GCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGGTGCTT
genomic: GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAGgtaggtgggg ... caatttgcagGCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
EST: gi|5006225|gb|AI712287.1|AI712287
EST:     GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAG                         GCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
genomic: GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAGgtaggtgggg ... caatttgcagGCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
EST: gi|60349938|gb|DN216911.1|DN216911
EST:     GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAG                         GCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
genomic: GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAGgtaggtgggg ... caatttgcagGCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
EST: gi|71428990|gb|DR810040.1|DR810040
EST:     GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAG                         GCATTCAGGGGATGGCGCCGAGTAACAACAGGGCTTTGGAGCTGGTTGCTT
genomic: GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAGgtaggtgggg ... caatttgcagGCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
EST: gi|76283944|gb|DV023512.1|DV023512
EST:     GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAG                         GCATTCAGGGGATGGCGCCGAGTAA
genomic: GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAGgtaggtgggg ... caatttgcagGCATTCAGGGGATGGCGCCGAGTAA
EST: gi|20513022|gb|BQ280208.1|BQ280208
EST:     GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAG                         GCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
genomic: GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAGgtaggtgggg ... caatttgcagGCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
EST: gi|26457465|gb|CA829048.1|CA829048
EST:     GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAG                         GCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
genomic: GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAGgtaggtgggg ... caatttgcagGCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
EST: gi|78025444|gb|DV493831.1|DV493831
EST:     GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAG                         GCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
genomic: GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAGgtaggtgggg ... caatttgcagGCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
EST: gi|78544427|gb|DV621925.1|DV621925
EST:     GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATTTGCCAACATCTTGGAG                         GCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
genomic: GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAGgtaggtgggg ... caatttgcagGCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
EST: gi|21626078|gb|BQ620999.1|BQ620999
EST:     GAAAGAAATCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAG                         GCATTCAGGGGATGGCGCCGAGTAACAACCAGGCTTTGGAGCTGGTTGCTT
genomic: GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAGgtaggtgggg ... caatttgcagGCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
EST: gi|211383597|gb|FL452880.1|FL452880
EST:     GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAG                         GCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
genomic: GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAGgtaggtgggg ... caatttgcagGCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
EST: gi|61118250|gb|DN559211.1|DN559211
EST:     GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAG                         GCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
genomic: GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAGgtaggtgggg ... caatttgcagGCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
EST: gi|31612035|gb|CD568657.1|CD568657
EST:     GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAG                         GCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
genomic: GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAGgtaggtgggg ... caatttgcagGCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
EST: gi|12970923|gb|BG267226.1|BG267226
EST:     GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAG                         GCATTCAGAGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT
genomic: GAAAGTGTTCAGCTAGACCGCAAATCTCGGAATCTGCCAACATCTTGGAGgtaggtgggg ... caatttgcagGCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccgggaaacaccatgtgatggaatgcgtgtatggtgtgtgccttcaatttgcagGCATTCAGGGGATGGCGCCGAGTAACAACAAGGCTTTGGAGCTGGTTGCTTGACTTGACCCTGTATCATGTAATTTGTATGCCAATCATTTGCAGTGATA
                                       tgccttc  CT-rich tract
                                           ttcaattt  TA-rich tract