1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gtggtggaagcctttgacactaggtctgtttttctggtattctatcaataacccttatgttccagccagtggttattgacaattttctcatacaatacagCTGCAACACATGGGAATATGTCGTTTAGCCTGATTTCTGCAGCTGATGCTCTTCTGGGCTCATCTGCAAGCAAGTACAGTGCATTAGACTGTCAGAGGCC
species | Zea mays |
transcript | GRMZM2G099452_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAACACTAGGAAATGGAAAACTTATTTCTGGACATGGAGTATCTC CTGCAACACATGGGAATTTGTCATTTAGCCTGATTTCTGCAGCTGATGCTCEST: gi|86472826|gb|DY239196.1|DY239196
genomic: TAACACTAGGAAATGGAAAACTTATTTCTGGACTTGGAGTATCTCgtaagtcctt ... tacaatacagCTGCAACACATGGGAATATGTCGTTTAGCCTGATTTCTGCAGCTGATGCTC
EST: TCATTTAACACTAGGAAATGGAAAACTTATTTCTGGACTTGGAGTATCTC CTGCAACACATGGGAATATGTCGTTTACCCTGATTTCTGCAGCTGATGCTCEST: gi|31355042|gb|CD439399.1|CD439399
genomic: TCATTTAACACTAGGAAATGGAAAACTTATTTCTGGACTTGGAGTATCTCgtaagtcctt ... tacaatacagCTGCAACACATGGGAATATGTCGTTTAGCCTGATTTCTGCAGCTGATGCTC
EST: TCATTTAACACTAGGAAATGGAAAACTTATTTCTGGACTTGGAGTATCTC CTGCAACACATGGGAATATGTCGTTTAGCCTGATTTCTGCAGCTGATGCTCEST: gi|60358693|gb|DN225666.1|DN225666
genomic: TCATTTAACACTAGGAAATGGAAAACTTATTTCTGGACTTGGAGTATCTCgtaagtcctt ... tacaatacagCTGCAACACATGGGAATATGTCGTTTAGCCTGATTTCTGCAGCTGATGCTC
EST: TCATTTAACACTAGGAAATGGAAAACTTATTTCTGGACTTGGAGTATCTC CTGCAACACATGGGAATATGTCGTTTAGCCTGATTTCTGCAGCTGATGCTCEST: gi|60358392|gb|DN225365.1|DN225365
genomic: TCATTTAACACTAGGAAATGGAAAACTTATTTCTGGACTTGGAGTATCTCgtaagtcctt ... tacaatacagCTGCAACACATGGGAATATGTCGTTTAGCCTGATTTCTGCAGCTGATGCTC
EST: TCATTTAACACTAGGAAATGGAAAACTTATTTCTGGACTTGGAGTATCTC CTGCAACACATGGGAATATGTCGTTTAGCCTGATTTCTGCAGCTGATGCTCEST: gi|31356446|gb|CD440803.1|CD440803
genomic: TCATTTAACACTAGGAAATGGAAAACTTATTTCTGGACTTGGAGTATCTCgtaagtcctt ... tacaatacagCTGCAACACATGGGAATATGTCGTTTAGCCTGATTTCTGCAGCTGATGCTC
EST: TCATTTAACACTAGGAAATGGAAAACTTATTTCTGGACTTGGAGTATCTC CTGCAACACATGGGAATATGTCGNTTAGCCTGATTTCTGCAGCTGATGCTCEST: gi|31611998|gb|CD568620.1|CD568620
genomic: TCATTTAACACTAGGAAATGGAAAACTTATTTCTGGACTTGGAGTATCTCgtaagtcctt ... tacaatacagCTGCAACACATGGGAATATGTCGTTTAGCCTGATTTCTGCAGCTGATGCTC
EST: CACTAGGAAATGGAAAACTTATTTCTGGACTTGGAGTATCTC CTGCAACACATGGGGAATATGTCGTTTAGCCTGATTTCTGCAGCTGATGCTEST: gi|19351725|gb|BM896257.1|BM896257
genomic: CACTAGGAAATGGAAAACTTATTTCTGGACTTGGAGTATCTCgtaagtcctt ... tacaatacagCTGCAACACAT-GGGAATATGTCGTTTAGCCTGATTTCTGCAGCTGATGCT
EST: TCATTTAACACTAGGAAATGGAAAACTTATTTCTGGACTTGGAGTATCTC CTGCAACACATGGGAATATGTCGTTTAGCCTGATTTCTGCAGCTGATGCTCEST: gi|19351594|gb|BM896126.1|BM896126
genomic: TCATTTAACACTAGGAAATGGAAAACTTATTTCTGGACTTGGAGTATCTCgtaagtcctt ... tacaatacagCTGCAACACATGGGAATATGTCGTTTAGCCTGATTTCTGCAGCTGATGCTC
EST: TTAACACTAGGAAATGGAAAACTTATTTCTGGACTTGGTAGTATCTC CTGCAACACATGGTGAATATGTCGTTTAGCCTGATTTCTGCAGCTGATGC
genomic: TTAACACTAGGAAATGGAAAACTTATTTCTGGACTTGG-AGTATCTCgtaagtcctt ... tacaatacagCTGCAACACATGG-GAATATGTCGTTTAGCCTGATTTCTGCAGCTGATGC
caataacccttatgttccagccagtggttattgacaattttctcatacaatacagCTGCAACACATGGGAATATGTCGTTTAGCCTGATTTCTGCAGCTGATGCTCTTCTGGGCTCATCTGCAAGCAAGTACAGTGCATTAGACTGTCAGAGGCC
tattgac putative branch site (score: 2)
ttttctcat putative PPT
ttattgacaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtggaagcctttgacactaggtctgtttttctggtattctatcaataacccttatgttccagccagtggttattgacaattttctcatacaatacagCTGCAACACATGGGAATATGTCGTTTAGCCTGATTTCTGCAGCTGATGCTCTTCTGGGCTCATCTGCAAGCAAGTACAGTGCATTAGACTGTCAGAGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG