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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctgtgtctttcagcctagataatataaaaccgtagcgcatactgctatttttttcctgatatttatgctgtctctgatattgtgattgcaacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACCCTCTTTAAC

Basic information

species Zea mays
transcript GRMZM2G099255_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099255_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os06g48700.1 (Oryza sativa), 3'ss of exon 7
------tctgtgtctttcagcctagataatataaaaccgtagcgcatactgctatttttttcctgatatttatgctgtctctgatattgtgattgcaacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACCCTCTTTAAC
        |  ||   |    ||| ||  | ||  |||   |     | |||| || ||| |||||  ||||     |  ||||| |||||||||||  ||  ||||| |||||||||||||||||||||||||| || || ||||| ||||||||||||||||| 
gaaatgctttggttcatttctctacatctt-tatgaccactga----attgctgttgttt-cctgaattttagctctttactgatcttgtgattgcacttttgcagCCGGGAAACGAATGGCATAACTGCTATTCTGATGAACACTATTTGCCAACCCTCTTTAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|113702130|gb|EE679634.1|EE679634
EST:     TTATACTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|78105512|gb|DV523930.1|DV523930
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|78090001|gb|DV518375.1|DV518375
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|76018436|gb|DT945606.1|DT945606
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|101398462|gb|EB821104.1|EB821104
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|86474172|gb|DY240542.1|DY240542
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|78093093|gb|DV521467.1|DV521467
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|211482405|gb|FK951270.1|FK951270
EST:     GTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: GTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|86471048|gb|DY237418.1|DY237418
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|71774867|gb|DR972745.1|DR972745
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|78077573|gb|DV506007.1|DV506007
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|101388829|gb|EB816396.1|EB816396
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|148961000|gb|EE011700.2|EE011700
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|37388428|gb|CF631423.1|CF631423
EST:     TTATACTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|71767366|gb|DR965303.1|DR965303
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|211278467|gb|FL480336.1|FL480336
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAGCGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|149106921|gb|EE188822.2|EE188822
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|211485273|gb|FK951273.1|FK951273
EST:     GTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: GTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|71442672|gb|DR823722.1|DR823722
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|37394285|gb|CF634415.1|CF634415
EST:     TTATACTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|86469460|gb|DY235830.1|DY235830
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|149082889|gb|EE172120.2|EE172120
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|50337694|gb|CO532820.1|CO532820
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|76912822|gb|DV164897.1|DV164897
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
EST: gi|148963210|gb|EE014187.2|EE014187
EST:     TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAG                         CCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC
genomic: TTATTCTCGCGGACACCCTTTACTATGGGAAGTTCAAGCGTTACTGTAAGgtgatccctt ... aacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatttttttcctgatatttatgctgtctctgatattgtgattgcaacttcacagCCAGGAAACGAATGGCATAACTGCTATTCAGACGAGCACTACTTGCCAACCCTCTTTAAC
            tgatatttat  TA-rich tract