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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattacatctagatatacaattcatatgttatggcaacaaattccatatgatatatggattatatccatgctcttgtaatttgtatttgtatttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTTTGCTGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGATGGCTATTCCAG

Basic information

species Zea mays
transcript GRMZM2G098011_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G098011_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g04190.2 (Oryza sativa), 3'ss of exon 7
aattacatctagatatacaattcatatgttatggcaacaaattccatatgatatatggatt---atatccatgctcttgtaatttgtat----ttgtatttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTTTGCTGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGATGGCTATTCCAG
          ||  ||     | | |    ||||||||||| |   ||||| ||   | ||   |||| ||   | || | || |||||     ||||| |||| ||||||||||||||||| |||||| |  | ||||||||||||||||| ||| | || |||||  |||| |||||||||||||| ||||||||||||
------gaacag-cattgtgctgaaaaaagatggcaacaaactttgtatgacatgcaggttgttatattcacattgttttcatatgtatgtgtctgtatgtaataagGTGGAGGACAATGTTCGGAATTTCAATTGTTCCATCCATTTTGCTTGCTCTTGGGATGGCTGTTTCACCTGAAAGCCCTCGTTGGCTATTCCAG

upper sequence: GRMZM2G098011_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 7
aattacatctagatatacaattcatatg--ttatggcaacaaattccatatgatata-tggattatatccatgctcttgtaatttgtatttgtatttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTTTGCTGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGATGGCTATTCCAG
   | |  |    |    | |||| |    ||       ||   | ||      ||  |   ||  ||  |     || |  ||| || || | |||||||||||||||||||||||||||  ||||||| || || || ||| |  ||||| | |||||||| ||||| || || || ||||| ||||| || |||
--cttctccattctgcttatttcagaaaacttccaagtgcagtgttcactgctcatcctctctttcatgtagctcattatgttttctaatttt-tttaatcagGTGGAGGACAATGTTTGGTGTTGCTGTTGTCCCCTCTATTCTATTGGCTTTGGGAATGGCATTTTCTCCAGAGAGTCCTCGGTGGCTTTTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13198611|gb|BG354413.1|BG354413
EST:     ATTCTTGCAGCTTTGTTAGCTGGATTGCCTTTGGCAGGAAATCCTGCCTG                         GTGGAGGACAATGTTTGGAATTGCTGCAGTTCCATCCATTTTGCTGGCTGT
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTTTGGCAGGAAATCCTGCCTGgtaagtttta ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTTTGCTGGCTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgatatatggattatatccatgctcttgtaatttgtatttgtatttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTTTGCTGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGATGGCTATTCCAG
                            ttgtaatttgtatttg  TA-rich tract