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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatgtaaaactttaatccattggtttagtatatgaaagaacaatgttctacatagcacccatcagatgactgttttggttgttttatttgtacagatcatcttcctaactacttttctgttacttctacatgttttagGCATTTTACCCTGTTCAATCCTGATTCCTGGACTGTTCTTTGTCCCTGAATCCCCAAGGTGGTTG

Basic information

species Zea mays
transcript GRMZM2G097768_T02
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71772625|gb|DR970553.1|DR970553
EST:     TGCCTATTTGTTTGGCATGTTTGTTCCCTGGAGAATTCTTGCTGTTCTAG                         GCATTTTACCCTGTTCAATCCTGATTCCTGGACTGTTCTTTGTCCCTGAAT
genomic: TGCCTATTTGTTTGGCATGTTTGTTCCCTGGAGAATTCTTGCTGTTCTAGgtatgatgta ... catgttttagGCATTTTACCCTGTTCAATCCTGATTCCTGGACTGTTCTTTGTCCCTGAAT
EST: gi|21390663|gb|BQ528712.1|BQ528712
EST:     TGCCTATTTGTTTGGCATGTTTGTTCCCTGGAGAATTCTTGCTGTTCTAG                         GCATTTTACCCTGTTCAATCCTGATTCCTGGACTGTTCTTTGTCCCTGAAT
genomic: TGCCTATTTGTTTGGCATGTTTGTTCCCTGGAGAATTCTTGCTGTTCTAGgtatgatgta ... catgttttagGCATTTTACCCTGTTCAATCCTGATTCCTGGACTGTTCTTTGTCCCTGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttgtacagatcatcttcctaactacttttctgttacttctacatgttttagGCATTTTACCCTGTTCAATCCTGATTCCTGGACTGTTCTTTGTCCCTGAATCCCCAAGGTGGTTG
                   tcctaac  putative branch site (score: 1)
                                       cttctac  putative PPT
                                              atgtttta  TA-rich tract