1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagttttgttcacattgagcttcaaccctctctaccccttgattttggtgccaagttataggtagtttgatgcatgtacgcagttgtaatttgtggtggcttaatgatttcataacagttgcctttgtttgtctctatacgatttgtagGATATTGCTTGCTAGGTTGGAGTACCTGCGGGAAACTTTTCAGATAAAGGAGGGTGACTTCCTAACATTTGATGCTTTG
species | Zea mays |
transcript | GRMZM2G097605_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGCAGATTAGTTATCATGTTTGGTGTTCCTTTCCAGTACACATTGAGTCG GATATTGCTTGCTAGGTTGGAGTACCTGCGGGAAACTTTTCAGATAAAGGAEST: gi|211462979|gb|FL459139.1|FL459139
genomic: GGCAGATTAGTTATCATGTTTGGTGTTCCTTTCCAGTACACATTGAGTCGgtgagttttg ... cgatttgtagGATATTGCTTGCTAGGTTGGAGTACCTGCGGGAAACTTTTCAGATAAAGGA
EST: GGCAGATTAGTTATCATGTTTGGTGTTCCTTTCCAGTACACATTGAGTCG GATATTGCTTGCTAGGTTGGAGTACCTGCGGGAAACTTTTCAGATAAAGGAEST: gi|61118799|gb|DN559760.1|DN559760
genomic: GGCAGATTAGTTATCATGTTTGGTGTTCCTTTCCAGTACACATTGAGTCGgtgagttttg ... cgatttgtagGATATTGCTTGCTAGGTTGGAGTACCTGCGGGAAACTTTTCAGATAAAGGA
EST: GGCAGATTAGTTATCATGTTTGGTGTTCCTTTCCAGTACACATTGAGTCG GATATTGCTTGCTAGGTTGGAGTACCTGCGGGAAACTTTTCAGATAAAGGA
genomic: GGCAGATTAGTTATCATGTTTGGTGTTCCTTTCCAGTACACATTGAGTCGgtgagttttg ... cgatttgtagGATATTGCTTGCTAGGTTGGAGTACCTGCGGGAAACTTTTCAGATAAAGGA
ggtggcttaatgatttcataacagttgcctttgtttgtctctatacgatttgtagGATATTGCTTGCTAGGTTGGAGTACCTGCGGGAAACTTTTCAGATAAAGGAGGGTGACTTCCTAACATTTGATGCTTTG
tcataac putative branch site (score: 2)
ttaatgatttcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttgttcacattgagcttcaaccctctctaccccttgattttggtgccaagttataggtagtttgatgcatgtacgcagttgtaatttgtggtggcttaatgatttcataacagttgcctttgtttgtctctatacgatttgtagGATATTGCTTGCTAGGTTGGAGTACCTGCGGGAAACTTTTCAGATAAAGGAGGGTGACTTCCTAACATTTGATGCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG