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gtatactgctatttgatacagtactggcctaagattttatcaaactcatatatactttggtaccgacttgccttgattatagTTGGCTGAAGACCTTGGGGCTTCCCCAGTTTGGGTGGTGAATGATG
species | Zea mays |
transcript | GRMZM2G097277_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGACTGATGTTGCGCTTGGATTTTTTGAGTTCCTTCAG TTGGCTGAAGACCTTGGGGCTTCCCCATTTTGGGTGGTGAATGATGEST: gi|71757747|gb|DR955684.1|DR955684
genomic: GGACTGATGATGGGCTTGGATTTTTTGAGTTCCTTCAGgtatactgct ... ttgattatagTTGGCTGAAGACCTTGGGGCTTCCCCAGTTTGGGTGGTGAATGATG
EST: CCTGGGGATACTGGACTGATGATGGGCTTGGATTTTTTGAGTTCCTTCAG TTGGCTGAAGACCTTGGGGCTTCCCCAGTTTGGGTGGTGAATGATGEST: gi|5895641|gb|AW036887.1|AW036887
genomic: CCTGGGGATACTGGACTGATGATGGGCTTGGATTTTTTGAGTTCCTTCAGgtatactgct ... ttgattatagTTGGCTGAAGACCTTGGGGCTTCCCCAGTTTGGGTGGTGAATGATG
EST: TTTTTGAGTTCCTTCAG TTGGCTGAAGACCTTGGGGCTTCCCCAGTTTGGGTGGTGAATGATGEST: gi|67042721|gb|CO468976.1|CO468976
genomic: TTTTTGAGTTCCTTCAGgtatactgct ... ttgattatagTTGGCTGAAGACCTTGGGGCTTCCCCAGTTTGGGTGGTGAATGATG
EST: CCTGGGGATACTGGACTGATGATGGGCTTGGATTTTTTGAGTTCCTTCAG TTGGCTGAAGACCTTGGGGCTTCCCCAGTTTGGGTGGTGAATGATG
genomic: CCTGGGGATACTGGACTGATGATGGGCTTGGATTTTTTGAGTTCCTTCAGgtatactgct ... ttgattatagTTGGCTGAAGACCTTGGGGCTTCCCCAGTTTGGGTGGTGAATGATG
cctaagattttatcaaactcatatatactttggtaccgacttgccttgattatagTTGGCTGAAGACCTTGGGGCTTCCCCAGTTTGGGTGGTGAATGATG
ccttgat putative branch site (score: 118)
cttgcctt CT-rich tract
attttatcaaactcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatactgctatttgatacagtactggcctaagattttatcaaactcatatatactttggtaccgacttgccttgattatagTTGGCTGAAGACCTTGGGGCTTCCCCAGTTTGGGTGGTGAATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA