Sequence
atgc intronic sequence ATGC exonic sequencegtaaatgtgtttgactattttcacattgtccattggtttctttccagtttttaagtttatttgtactattccagGTGCTGTGAGTATGCACTTCTGATACTGGAGTATTGGGCAGATGCCTCAGGGATACAACGTTCAGCTGATTTATATGAGGATATGATAAAATGCTACACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G096905_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g42840.1 (Oryza sativa), 3'ss of exon 10
----gtaaatgtgtttgactattttcacattgtc---cattggtttctttccagtttttaagtttatt-tgtactattccagGTGCTGTGAGTATGCACTTCTGATACTGGAGTATTGGGCAGATGCCTCAGGGATACAACGTTCAGCTGATTTATATGAGGATATGATAAAATGCTACACT
| ||||| || ||| ||| | | || | | || || | | ||| | ||| | |||||||| ||||| || ||| | ||||||||||||||||| |||||| | | |||||||||||||||||||||||| || ||| | ||||| ||||
gtatatgtttgtgtgtggttatcttcctgcttccatgtatataatgtgctgaagccttgaggcttacgatctaccgtattagGTGCTGCGAGTACGCTCTTTTAATACTGGAGTATTGGGCTGATGCCCCGGAGATACAACGTTCAGCTGATTTATACGAAGATCTAATAAAGTGCTGTGTA
upper sequence: GRMZM2G096905_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA19G35460.1 (Glycine max), 3'ss of exon 10
gtaaatgtgtttgactattt-----tcaca---ttgtccattggtttctttccagtttttaagtttatttgtactattccagGTGCTGTGAGTATGCACTTCTGATACTGGAGTATTGGGCAGATGCCTCAGGGATACAACGTTCAGCTGATTTATATGAGGATATGATAAAATGCTACACT
||| || | | |||| ||||| | | ||||||| | || | | ||||||||| | ||||| ||||| ||||| | || | || || ||||| | ||||| ||| ||||| || ||||||||||||||||||||| ||||||| || | |
gtatatatcaacaattattgaaaagtcacaagctagagttttggtttttgatcaataccagtggacatttgtactgt---agGTGTTGTGAATATGCTTATTTGGTCCTAGAACATTGGCCTGATGCACCAGAAATACATCGATCAGCTGATTTATATGAGGATCTGATAAAGTGTTGTGTT
upper sequence: GRMZM2G096905_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA03G32710.1 (Glycine max), 3'ss of exon 10
gtaaatgtgtttgactattttca---cattgtcca-----ttggtttctttccagtttttaagtttatttgtactattccagGTGCTGTGAGTATGCACTTCTGATACTGGAGTATTGGGCAGATGCCTCAGGGATACAACGTTCAGCTGATTTATATGAGGATATGATAAAATGCTACACT
||| || | | |||||| | || | | ||||||| | | | | ||||||||| | ||||| ||||| ||||| | || | || || ||||| | ||||| | | ||||| || ||||||||||||||||||||| ||||||| || | |
gtatatattatcaactattgaaaagacacaagctagagttttggtttttgattaataccattggacatttgtactgt---agGTGTTGTGAATATGCTTATTTGGTCCTAGAACATTGGCCTGATGCACCTGAAATACATCGATCAGCTGATTTATATGAGGATCTGATAAAGTGTTGTGTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcacattgtccattggtttctttccagtttttaagtttatttgtactattccagGTGCTGTGAGTATGCACTTCTGATACTGGAGTATTGGGCAGATGCCTCAGGGATACAACGTTCAGCTGATTTATATGAGGATATGATAAAATGCTACACT
ctattcc CT-rich tract
tttttaagtttatttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatgtgtttgactattttcacattgtccattggtttctttccagtttttaagtttatttgtactattccagGTGCTGTGAGTATGCACTTCTGATACTGGAGTATTGGGCAGATGCCTCAGGGATACAACGTTCAGCTGATTTATATGAGGATATGATAAAATGCTACACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT