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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaacatccttttgtctttatatggggctcttggcctatcagtaaaaataataattcaggaaatcgacttgatcctgatatttagaataacatgtttcgtttgtattataatctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCGAGGTTGCTCTTGTCACAATTCCTCCTGAATATGCATTTGGTTCAACTGA

Basic information

species Zea mays
transcript GRMZM2G096585_T05
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096585_T05 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os08g41390.2 (Oryza sativa), 3'ss of exon 7
gtaagaacatccttttgtctttatatgg-ggctcttggcctatcagtaaaaataataattcaggaaatcgacttgatcctgatatttag-aataacatgtttcgtttgtattataatctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCGAGGTTGCTCTTGTCACAATTCCTCCTGAATATGCATTTGGTTCAACTGA
    |  | |  |    |   | ||||  |||  |   | | | |||  ||| ||         | |  |   | |  ||||||  ||| || ||| |||| | |||  ||| || | |  |||||||||| || ||||  ||| |||| ||||||||| | ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||
----gtgctttgtcaacttcctctatgctggccatacacttttaagttcaaacaa---------ataatgttcttactctgataagtagtaacaacttgttcccttttgatt-tactttccttccagAGGAGGTCATTGATGGTATTGACCGTGCTGTGCTAAACATGAAGAATGGCGAGGTTGCTCTTGTAACAATTCCTCCTGAATACGCATTTGGTTCTACTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32931241|gb|CF036053.1|CF036053
EST:     AAGAGCCATTTAAATTCAAGACCGATGAAG                         AGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
genomic: AAGAGCCATTTAAATTCAAGACCGATGAAGgtaagaacat ... ctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
EST: gi|211281609|gb|FL229383.1|FL229383
EST:     TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAG                         AGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
genomic: TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAGgtaagaacat ... ctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
EST: gi|211292816|gb|FL187030.1|FL187030
EST:     TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAG                         AGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
genomic: TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAGgtaagaacat ... ctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
EST: gi|211294948|gb|FL187036.1|FL187036
EST:     TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAG                         AGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
genomic: TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAGgtaagaacat ... ctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
EST: gi|5901160|gb|AW042260.1|AW042260
EST:     TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAG                         AGGAAGTTATTGCCGGTCTTGATCGTTCTGTGTTGAACATGAAGAAGGGCG
genomic: TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAGgtaagaacat ... ctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
EST: gi|32936507|gb|CF041326.1|CF041326
EST:     TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAG                         AGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
genomic: TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAGgtaagaacat ... ctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
EST: gi|33094682|gb|CF054676.1|CF054676
EST:     TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAG                         AGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
genomic: TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAGgtaagaacat ... ctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
EST: gi|71596242|gb|DR906993.1|DR906993
EST:     GGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAG                         AGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
genomic: GGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAGgtaagaacat ... ctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
EST: gi|211292817|gb|FL187031.1|FL187031
EST:     TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAG                         AGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
genomic: TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAGgtaagaacat ... ctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
EST: gi|211294944|gb|FL187032.1|FL187032
EST:     CACAAAGAAGGGGCATGATGAAGAGCCATTTAAATTCAAGACCGATGAAG                         AGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
genomic: TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAGgtaagaacat ... ctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
EST: gi|33094689|gb|CF054683.1|CF054683
EST:     TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAG                         AGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
genomic: TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAGgtaagaacat ... ctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
EST: gi|32934317|gb|CF039129.1|CF039129
EST:     TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAG                         AGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
genomic: TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAGgtaagaacat ... ctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
EST: gi|32935304|gb|CF040116.1|CF040116
EST:     TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAG                         AGGAAGTTATTGCCGGTCTTGATCGCGCTGTGTTGAACATGAAGAAGGGCG
genomic: TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAGgtaagaacat ... ctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
EST: gi|33091320|gb|CF051314.1|CF051314
EST:     TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAG                         AGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
genomic: TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAGgtaagaacat ... ctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
EST: gi|211062769|gb|FL037852.1|FL037852
EST:     TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAG                         AGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
genomic: TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAGgtaagaacat ... ctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
EST: gi|211294946|gb|FL187034.1|FL187034
EST:     ACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAG                         AGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
genomic: ACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAGgtaagaacat ... ctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
EST: gi|211294949|gb|FL187037.1|FL187037
EST:     TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAG                         AGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
genomic: TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAGgtaagaacat ... ctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
EST: gi|211281607|gb|FL229381.1|FL229381
EST:     TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAG                         AGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG
genomic: TACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTCAAGACCGATGAAGgtaagaacat ... ctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgatcctgatatttagaataacatgtttcgtttgtattataatctgtttccagAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAGGGCGAGGTTGCTCTTGTCACAATTCCTCCTGAATATGCATTTGGTTCAACTGA
                 gaataac  putative branch site (score: 2)
                                            tctgtttcc  putative PPT
          atatttagaataacat  TA-rich tract