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...tttggcatcaattccattagcttaggttgataggtctgtacaggtacagccatacaggatatatttcttttcgtaatatatctccgactcaccactacagGAAATGCGAGAACTGCAAGAGCTGCAGAGGACATTATACACATTCTTGCATGCTATGGCAACACATGATCTTTCTGCAGTTCTCCTTACTCCTAGCTCTA
species | Zea mays |
transcript | GRMZM2G096106_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGATATTATCACAAGATGCATTTTCAGCTGGTCCTGCAAGCAATACTGAG GAAATGCGAGAACTGCAAGAGCTGCAGAGGACATEST: gi|32944062|gb|CF048881.1|CF048881
genomic: CGATATTATCACAAGATGCATTTTCAGCTGGTCCTGCAAGCAATACTGAGgtaatgttga ... accactacagGAAATGCGAGAACTGCAAGAGCTGCAGAGGACAT
EST: TGATATTATCACAAGATGCATTTTCAGCTGGTCCTGCAAGCAATACTGAG GAAATGAGAGAACTGCAAGAGCTGCAGAGGACATTATACACATTCTTGCAT
genomic: CGATATTATCACAAGATGCATTTTCAGCTGGTCCTGCAAGCAATACTGAGgtaatgttga ... accactacagGAAATGCGAGAACTGCAAGAGCTGCAGAGGACATTATACACATTCTTGCAT
acagccatacaggatatatttcttttcgtaatatatctccgactcaccactacagGAAATGCGAGAACTGCAAGAGCTGCAGAGGACATTATACACATTCTTGCATGCTATGGCAACACATGATCTTTCTGCAGTTCTCCTTACTCCTAGCTCTA
gactcac putative branch site (score: 62)
atatatttcttttcgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggcatcaattccattagcttaggttgataggtctgtacaggtacagccatacaggatatatttcttttcgtaatatatctccgactcaccactacagGAAATGCGAGAACTGCAAGAGCTGCAGAGGACATTATACACATTCTTGCATGCTATGGCAACACATGATCTTTCTGCAGTTCTCCTTACTCCTAGCTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - -ctgtaca
- - - - - - - - - - - - - - - - - - - - - - - - gccatac