1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatttgctgtttattcagcaattatttcatcctttcctaaccatataggcctaagtgagctttttatgtatacatcattgaaccagATGAATCCTAATACTGATTATGGTTGCTTGAAGACTTTTGGTTCTTGTTTTAGTGAAGACATTCGTATACCTGCT
species | Zea mays |
transcript | GRMZM2G095778_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGCATTTGAGAAGTCTCTTGGCTTCCGGTTGCAAAAG ATGAATCCTAATACTGATTATGGTTGCTTGAAGACTTTTGGTTCTTGTTTTEST: gi|37377338|gb|CF625266.1|CF625266
genomic: TGCATTTGAGAAGTCTCTTGGCTTCCGGTTGCAAAAGgtatttgctg ... attgaaccagATGAATCCTAATACTGATTATGGTTGCTTGAAGACTTTTGGTTCTTGTTTT
EST: TGCA-TTGAGAAAGTCTC-TGGCTTTCCGGTTGCAAAAG ATGAATCCTAATACTGATTATGGTTGCTTGAAGACTTTTGGTTCTTGTTTTEST: gi|211482002|gb|FL392969.1|FL392969
genomic: TGCATTTGAG-AAGTCTCTTGGC-TTCCGGTTGCAAAAGgtatttgctg ... attgaaccagATGAATCCTAATACTGATTATGGTTGCTTGAAGACTTTTGGTTCTTGTTTT
EST: TGCATTTGAGAAGTCTCTTGGCTTCCGGTTGCAAAAG ATGAATCCTAATACTGATTATGGTTGCTTGAAGACATTTGGTTCTTGTTTTEST: gi|211430121|gb|FL449154.1|FL449154
genomic: TGCATTTGAGAAGTCTCTTGGCTTCCGGTTGCAAAAGgtatttgctg ... attgaaccagATGAATCCTAATACTGATTATGGTTGCTTGAAGACTTTTGGTTCTTGTTTT
EST: TGCATATGAGAAGTCTCTTGGCTTCCGGTTGCAAAAG ATGACTCCTAATACTGATTATGGTTGCTTGAAGACATTTGGTTCTTGTTTCEST: gi|89760691|gb|DY689000.1|DY689000
genomic: TGCATTTGAGAAGTCTCTTGGCTTCCGGTTGCAAAAGgtatttgctg ... attgaaccagATGAATCCTAATACTGATTATGGTTGCTTGAAGACTTTTGGTTCTTGTTTT
EST: TGCATTTGAGAAGTCTCTTGGCTTCCGGTTGCAAAAG ATGAATCTTAATACTGATTATGGTTGCTGGAAGACTTTTGGTTCTTGTTTT
genomic: TGCATTTGAGAAGTCTCTTGGCTTCCGGTTGCAAAAGgtatttgctg ... attgaaccagATGAATCCTAATACTGATTATGGTTGCTTGAAGACTTTTGGTTCTTGTTTT
ctttcctaaccatataggcctaagtgagctttttatgtatacatcattgaaccagATGAATCCTAATACTGATTATGGTTGCTTGAAGACTTTTGGTTCTTGTTTTAGTGAAGACATTCGTATACCTGCT
tcctaac putative branch site (score: 99)
tttttatgtatacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgctgtttattcagcaattatttcatcctttcctaaccatataggcctaagtgagctttttatgtatacatcattgaaccagATGAATCCTAATACTGATTATGGTTGCTTGAAGACTTTTGGTTCTTGTTTTAGTGAAGACATTCGTATACCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA