1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtctgtctttccttactcagaacttttgtcggttttctagtgttatttcgatccacaccattctgtagatgtagttcgagttttctagtgtcgattgatatctgacattggtagaggataactgggtttagaagtttacaaccctgtcgtctcctgatatgtttcttggttgtctcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCATATCTTCCACTGCAGCGCACATCAATGAGAGGAAAACCTGCAGAGTAGAC
species | Zea mays |
transcript | GRMZM2G094255_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCATEST: gi|78027522|gb|DV495909.1|DV495909
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCATEST: gi|12970168|gb|BG266848.1|BG266848
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCATEST: gi|78115024|gb|DV533412.1|DV533412
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: GACCTGCGCCGTCAAGGCACTGTCCCCAG CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCATEST: gi|31355338|gb|CD439695.1|CD439695
genomic: GACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCATEST: gi|76284483|gb|DV024051.1|DV024051
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCATEST: gi|47962518|gb|CN845227.1|CN845227
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: CAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCATEST: gi|101397350|gb|EB820598.1|EB820598
genomic: CAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: CTTCGACAGGCAACAGAGTATGACTTGCGCCGTCAAGGCACTGTCCCCAG CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCATEST: gi|94478728|gb|EB707686.1|EB707686
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCATEST: gi|71327961|gb|DR800622.1|DR800622
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCATEST: gi|60349510|gb|DN216483.1|DN216483
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCATEST: gi|211377776|gb|FL432413.1|FL432413
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: GCACTGTCCCCAG CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCATEST: gi|74232835|gb|DT640749.1|DT640749
genomic: GCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCATEST: gi|78086465|gb|DV514858.1|DV514858
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGEST: gi|31664107|gb|CD573287.1|CD573287
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAG
EST: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCATEST: gi|78107717|gb|DV526135.1|DV526135
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
agaagtttacaaccctgtcgtctcctgatatgtttcttggttgtctcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCATATCTTCCACTGCAGCGCACATCAATGAGAGGAAAACCTGCAGAGTAGAC
tcctgat putative branch site (score: 3)
ttgtctc putative PPT
atatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtctttccttactcagaacttttgtcggttttctagtgttatttcgatccacaccattctgtagatgtagttcgagttttctagtgtcgattgatatctgacattggtagaggataactgggtttagaagtttacaaccctgtcgtctcctgatatgtttcttggttgtctcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCATATCTTCCACTGCAGCGCACATCAATGAGAGGAAAACCTGCAGAGTAGAC
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