1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtattgatacattcctaaaatattgtagcctttccttaactaacctgatgaaaaaaggaaattaattccagtattttattgtaatatgcttgttgctaaatattgttttaccagGCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGTCTTGGTCAAAACTTTGCCAAGATGTTTGATATCACTTTTGAGAATGAGA
species | Zea mays |
transcript | GRMZM2G094123_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAAGCGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAG GCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGTEST: gi|26559243|gb|CA831478.1|CA831478
genomic: AAAGTGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAGgtattgatac ... gttttaccagGCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGT
EST: TTGCAGGTGGCCTTTATACCACCAGCGTTGAG GCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGTEST: gi|91052462|gb|EB162880.1|EB162880
genomic: TTGCAGGTGGCCTTTATACCACCAGCGTTGAGgtattgatac ... gttttaccagGCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGT
EST: AAAGTGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAG GCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGTEST: gi|60338824|gb|DN205797.1|DN205797
genomic: AAAGTGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAGgtattgatac ... gttttaccagGCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGT
EST: AAAGTGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAG GCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGTEST: gi|22521630|gb|BU080441.1|BU080441
genomic: AAAGTGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAGgtattgatac ... gttttaccagGCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGT
EST: AAAGCGAGATGGAAAAATTTGCAGG-GGCCTTTATACCACCAGCGTTGAG GCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGTEST: gi|60357064|gb|DN224037.1|DN224037
genomic: AAAGTGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAGgtattgatac ... gttttaccagGCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGT
EST: AAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAG GCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGTEST: gi|31359187|gb|CD443544.1|CD443544
genomic: AAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAGgtattgatac ... gttttaccagGCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGT
EST: AAAGCGAGATGGAAAAATTTGCAGGGGGCCTTTATACCACCAGCGTTGAG GCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGTEST: gi|67020078|gb|CO448827.1|CO448827
genomic: AAAGTGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAGgtattgatac ... gttttaccagGCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGT
EST: AAAGCGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAG GCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGTEST: gi|32935632|gb|CF040444.1|CF040444
genomic: AAAGTGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAGgtattgatac ... gttttaccagGCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGT
EST: AAAGTGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAG GCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGTEST: gi|67027210|gb|CO455959.1|CO455959
genomic: AAAGTGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAGgtattgatac ... gttttaccagGCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGT
EST: AAAGCGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAG GCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGTEST: gi|51871150|gb|CV126034.1|CV126034
genomic: AAAGTGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAGgtattgatac ... gttttaccagGCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGT
EST: AAAGCGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAG GCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGTEST: gi|60346669|gb|DN213642.1|DN213642
genomic: AAAGTGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAGgtattgatac ... gttttaccagGCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGT
EST: AAAGTGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAG GCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGTEST: gi|87155487|gb|DY400276.1|DY400276
genomic: AAAGTGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAGgtattgatac ... gttttaccagGCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGT
EST: AAAGCGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAG GCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGT
genomic: AAAGTGAGATGGAAAAATTTGCAGGTGGCCTTTATACCACCAGCGTTGAGgtattgatac ... gttttaccagGCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGT
aattaattccagtattttattgtaatatgcttgttgctaaatattgttttaccagGCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGTCTTGGTCAAAACTTTGCCAAGATGTTTGATATCACTTTTGAGAATGAGA
tgctaaa putative branch site (score: 347)
ttgtttt putative PPT
agtattttattgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgatacattcctaaaatattgtagcctttccttaactaacctgatgaaaaaaggaaattaattccagtattttattgtaatatgcttgttgctaaatattgttttaccagGCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGTCTTGGTCAAAACTTTGCCAAGATGTTTGATATCACTTTTGAGAATGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG