1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagatctcttcacacactttatttttctagtaccagtctggtaattgttttcctaacatcacattttttagGGGGAAGCATTGTTTCAGACACACGAGAATCTGGAACACCTAGCAATGATGGAGAGGGTTTTGGGACCTCTACCAGAGGATATGATACGGAAAGCAAG
species | Zea mays |
transcript | GRMZM2G094039_T06 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TATTCTTGTGGAGCTATGCTCT GGGGAAGCATTGTTTCAGACACACGAGAATCTGGAACACCTAGCAATGATGEST: gi|149082188|gb|EE171368.2|EE171368
genomic: TATTCTTGTTGAGCTATGCTCTgttagatctc ... cattttttagGGGGAAGCATTGTTTCAGACACACGAGAATCTGGAACACCTAGCAATGATG
EST: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAGCTATGCTCT GGGGAAGCATTGTTTCAGACACACGAGAATCTGGAACACCTAGCAATGATGEST: gi|74234528|gb|DT642442.1|DT642442
genomic: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAGCTATGCTCTgttagatctc ... cattttttagGGGGAAGCATTGTTTCAGACACACGAGAATCTGGAACACCTAGCAATGATG
EST: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAGCTATGCTCT GGGGAAGCATTGTTTCAGACACACGAGAATCTGGAACACCTAGCAATGATGEST: gi|71432790|gb|DR813840.1|DR813840
genomic: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAGCTATGCTCTgttagatctc ... cattttttagGGGGAAGCATTGTTTCAGACACACGAGAATCTGGAACACCTAGCAATGATG
EST: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAGCTATGCTCT GGGGAAGCATTGTTTCAGACACACGAGAATCTGGGACACCTAGCAATGATGEST: gi|71432789|gb|DR813839.1|DR813839
genomic: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAGCTATGCTCTgttagatctc ... cattttttagGGGGAAGCATTGTTTCAGACACACGAGAATCTGGAACACCTAGCAATGATG
EST: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAGCTATGCTCT GGGGAAGCATTGTTTCAGACACACGAGAATCTGGAACACCTAGCAATGATG
genomic: TTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAGCTATGCTCTgttagatctc ... cattttttagGGGGAAGCATTGTTTCAGACACACGAGAATCTGGAACACCTAGCAATGATG
ctttatttttctagtaccagtctggtaattgttttcctaacatcacattttttagGGGGAAGCATTGTTTCAGACACACGAGAATCTGGAACACCTAGCAATGATGGAGAGGGTTTTGGGACCTCTACCAGAGGATATGATACGGAAAGCAAG
tcctaac putative branch site (score: 1)
catttttt putative PPT
taattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagatctcttcacacactttatttttctagtaccagtctggtaattgttttcctaacatcacattttttagGGGGAAGCATTGTTTCAGACACACGAGAATCTGGAACACCTAGCAATGATGGAGAGGGTTTTGGGACCTCTACCAGAGGATATGATACGGAAAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG