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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctattattttcaattttcatctgtttaagattaagatgcatgatgtgattatactgagctgcatgatgtgattaatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA

Basic information

species Zea mays
transcript GRMZM2G093359_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093359_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g10310.1 (Oryza sativa), 3'ss of exon 7
gtattctattattttcaattttcatctgtttaagattaagatgcatgatgtgattatactgagctgcatgatgtgattaatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA
|||   |||| |||||| ||||| |       |||| | | |||||  | || ||| |||||| |   |        ||||||  ||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||
gtagg-tattcttttcagttttcgttc-----agatca-gttgcatactttggttaaactgagttttgta-------taatattgcagCCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149089319|gb|EE178541.2|EE178541
EST:     TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG                         CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGNACCTT
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTT
EST: gi|12046552|gb|BF728691.1|BF728691
EST:     TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG                         CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
EST: gi|78180016|gb|DV550389.1|DV550389
EST:     TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG                         CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
EST: gi|6973663|gb|AW438237.1|AW438237
EST:     TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG                         CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
EST: gi|149094603|gb|EE180134.2|EE180134
EST:     TGATGCTGAAGAACATATTTTTGGGCTACCTTTGATGAATGATTGGAGCG                         CCAGAGATATTCAGGCTTGGGAGACTATACCTC
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTC
EST: gi|149106513|gb|EE188405.2|EE188405
EST:     TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG                         CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCCTTGG-
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCC-TTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattaagatgcatgatgtgattatactgagctgcatgatgtgattaatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA
                                         gattaat  putative branch site (score: 3)
                                        tgattaatat  TA-rich tract