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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctcccttttttctacataatataatgatgcagctctcctgcccgttcgagaaaaaaaacttgcgaggtctaaatatctgttttgctgttttgtttcttagATCAATGGGCAGCAGTGCCCTTTCTCATTTAAGGGTAGCCCATACTGGATGGCTCCTGAG

Basic information

species Zea mays
transcript GRMZM2G093316_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093316_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g44642.1 (Oryza sativa), 3'ss of exon 7
---ctcccttttttctacataatataatgatgcagctctcctgcccgttcgagaaaaaaaacttgcgaggtctaaatatctgttttgctgttttgtttcttagATCAATGGGCAGCAGTGCCCTTTCTCATTTAAGGGTAGCCCATACTGGATGGCTCCTGAG
    |   | |||     |   |    |  |  |    |  | |   || |   |   |  |  ||    | | ||  ||| || |||   |   ||| | |||||||||||||||||||  | || ||||||||||||||||| ||||||||||||||||||
aagttatatgtttatgggaaggtccttttgtctatagatgtttcttctttggatatttatccgcgca---tatgaacttcttttctgccaatccatttttcagATCAATGGGCAGCAGTGTGCCTTTTCATTTAAGGGTAGCCCGTACTGGATGGCTCCTGAG

upper sequence: GRMZM2G093316_T01 (Zea mays), 3'ss of exon 7
lower sequence: Vv16s0050g00770.t01 (Vitis vinifera), 3'ss of exon 6
ctcccttttttctacataatataatgatgcagctctcctgcccgttcgagaaaaaaaacttgcga---ggtctaaatatctgttttgctgttttgtttcttagATCAATGGGCAGCAGTGCCCTTTCTCATTTAAGGGTAGCCCATACTGGATGGCTCCTGAG
     ||| || |  ||   |||   |  |    ||    |    ||  ||     |  ||   |    |  ||  |  |   |||  |    |||     |||||| |||||||   || ||||| ||||| ||||| ||||||||||||||||| ||||||
--tagtttcttgtgtatcgaatatcaac-ctatgcttgaccttagtcatgatgttcatgttaaaatccagcttacctgacatatttcattacatgtcatgcagATCACTGGGCAGTCATGTCCTTTATCATTCAAGGGAAGCCCATACTGGATGGCACCTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgagaaaaaaaacttgcgaggtctaaatatctgttttgctgttttgtttcttagATCAATGGGCAGCAGTGCCCTTTCTCATTTAAGGGTAGCCCATACTGGATGGCTCCTGAG
                     gtctaaa  putative branch site (score: 3)
                                       ctgttttgtttctt  putative PPT
                        taaatatctgtttt  TA-rich tract