1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtctgtttccccactgttcttgtggcttagttattttactagccatatgaaggtacttattatgtgtctatactttgcagAATGAGAAAACTCGTGCGGAGTCAGAAAGAACAACTGCTAGTGGTGAAAATGAAACATTACTTGAAGAATTAGAAATCAAACAAAAAGAAGTTGAGAGTT
species | Zea mays |
transcript | GRMZM2G093065_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAACCTGAAGCCCGAACAT AATGAGAAAACTCGTGCGGAGTCAGAAAGAACAACTGCTAGTGGTGAAAATEST: gi|78092721|gb|DV521095.1|DV521095
genomic: AAACCTGAAGACCGAACATgtctgtttcc ... tactttgcagAATGAGAAAACTCGTGCGGAGTCAGAAAGAACAACTGCTAGTGGTGAAAAT
EST: AGCTCCGTAGGAAGTACTCTGAGATGGAGTCAAACCTGAAGACCGAACAT AATGAGAAAACTCGTGCGGAGTCAGAAAGAACAACTGCTAGTGGTGAAAATEST: gi|60397130|gb|DN229946.1|DN229946
genomic: AGCTCCGTAGGAAGTACTCTGAGATGGAGTCAAACCTGAAGACCGAACATgtctgtttcc ... tactttgcagAATGAGAAAACTCGTGCGGAGTCAGAAAGAACAACTGCTAGTGGTGAAAAT
EST: AGCTCCGTAGGAAGTACTCTGAGATGGAGTCAAACCTGAAGACCGAACAT AATGAGAAAACTCGTGCGGAGTCAGAAAGAACAACTGCTAGTGGTGAAAAT
genomic: AGCTCCGTAGGAAGTACTCTGAGATGGAGTCAAACCTGAAGACCGAACATgtctgtttcc ... tactttgcagAATGAGAAAACTCGTGCGGAGTCAGAAAGAACAACTGCTAGTGGTGAAAAT
cttagttattttactagccatatgaaggtacttattatgtgtctatactttgcagAATGAGAAAACTCGTGCGGAGTCAGAAAGAACAACTGCTAGTGGTGAAAATGAAACATTACTTGAAGAATTAGAAATCAAACAAAAAGAAGTTGAGAGTT
ttattttacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtttccccactgttcttgtggcttagttattttactagccatatgaaggtacttattatgtgtctatactttgcagAATGAGAAAACTCGTGCGGAGTCAGAAAGAACAACTGCTAGTGGTGAAAATGAAACATTACTTGAAGAATTAGAAATCAAACAAAAAGAAGTTGAGAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT