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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttaattaagttctgctatatatgtttgtacataacttgtaaattgctatatgttgcaataatgacttctagtgtttctcttccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATTCCATTCTTTGACTTCTCTGTCGTGGAGAAGATTTCTGTTGATGCTGCCA

Basic information

species Zea mays
transcript GRMZM2G093050_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093050_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g03070.2 (Oryza sativa), 3'ss of exon 7
--------------gtcttaattaagttctgctatatatgtttgtacataa-cttgtaaattgctatatgttgcaataatgacttctagtgtttctcttccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATTCCATTCTTTGACTTCTCTGTCGTGGAGAAGATTTCTGTTGATGCTGCCA
                  |    | |   |   |  | | |||   ||| | ||| ||  ||  | | || |  |    ||  || |      | |  | |  |||||||| ||    || ||| | ||  | || ||||||||||||||||||||||| |||||||||||||| ||||| || |||||||| ||||||||||| |  |
gtatgttcaatggcacactgtacaggaagtataagttctcttttctcatgatcttttacgttattctttggttaacacgtggtttatgcacccttttgttctttttcagGCTTCCCAGATATTTCAGTCTGTGAAAATTGATATGCTCTCAAGAATGATCCCATTCTTTGACTTTTCTGTTGTTGAGAAGATCTCTGTTGATGCCGTGA

upper sequence: GRMZM2G093050_T01 (Zea mays), 3'ss of exon 7
lower sequence: Vv14s0060g01630.t01 (Vitis vinifera), 3'ss of exon 7
----------------------gtcttaattaagtt--ctgctatatatgtttgtacataacttgtaaattgctatatgttgcaataatgacttctagtgtttctcttccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATTCCATTCTTTGACTTCTCTGTCGTGGAGAAGATTTCTGTTGATGCTGCCA
                      |  ||   |   ||  ||||  ||   |||| |   | | |||||  |  || |   |||   |    |  |||    ||||| || |   | ||||  |||    | | | |  | || || ||||| |   | || |   |||| | ||| ||||| |||||||||||||||||||| ||||| ||||||| ||
gtgcattattattgtttagtttgcatttgctgtttttactgcactacgcgtttctgtttta-ttgtac-tcacttttctttgtgcttggaatatctttactttctgtttc---tccagGTGTCTCAAGTGTATCAGACTATGAAAATTGAGAGCTTGTCTAAGGTGATCCAATTTTTTGATTTCTCTGTCGTGGAGAAGATCTCTGTGGATGCTGTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211153327|gb|FL392714.1|FL392714
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|7227801|gb|AW566442.1|AW566442
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211392729|gb|FL395708.1|FL395708
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|32824826|gb|CD964548.1|CD964548
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTA
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTA
EST: gi|211201856|gb|FL394599.1|FL394599
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211443673|gb|FL052834.1|FL052834
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211288444|gb|FL410141.1|FL410141
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211249562|gb|FL389209.1|FL389209
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|33101952|gb|CF061912.1|CF061912
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211445786|gb|FL052841.1|FL052841
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211419178|gb|FL428599.1|FL428599
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211273865|gb|FL424030.1|FL424030
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|32793468|gb|CD945704.1|CD945704
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTA
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTA
EST: gi|211085801|gb|FL424023.1|FL424023
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGNATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|33097632|gb|CF057592.1|CF057592
EST:     AGCACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211445790|gb|FL052845.1|FL052845
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211377615|gb|FL429408.1|FL429408
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211443675|gb|FL052836.1|FL052836
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211443674|gb|FL052835.1|FL052835
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211445789|gb|FL052844.1|FL052844
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGANAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGNTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211445784|gb|FL052839.1|FL052839
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211455849|gb|FL371707.1|FL371707
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211065685|gb|FL394006.1|FL394006
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211389777|gb|FL378701.1|FL378701
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|101389303|gb|EB816606.1|EB816606
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211305683|gb|FL424509.1|FL424509
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211168236|gb|FL423103.1|FL423103
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|6654041|gb|AW267446.1|AW267446
EST:     GACAACATTGAAAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: GACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211271605|gb|FL408826.1|FL408826
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211445785|gb|FL052840.1|FL052840
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|7145426|gb|AW506907.1|AW506907
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|32931547|gb|CF036359.1|CF036359
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAAC--                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211098231|gb|FL427032.1|FL427032
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|7162285|gb|AW519892.1|AW519892
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211376834|gb|FL401929.1|FL401929
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211082383|gb|FL402150.1|FL402150
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211116333|gb|FL427476.1|FL427476
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211484709|gb|FL383652.1|FL383652
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211204302|gb|FL385171.1|FL385171
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211406012|gb|FL414969.1|FL414969
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|7238152|gb|AW573374.1|AW573374
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211527408|gb|FL405478.1|FL405478
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211443676|gb|FL052837.1|FL052837
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|6654040|gb|AW267445.1|AW267445
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTGGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211351487|gb|FL422809.1|FL422809
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211199329|gb|FL397381.1|FL397381
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211031752|gb|FL369429.1|FL369429
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211479170|gb|FL394819.1|FL394819
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211381637|gb|FL369263.1|FL369263
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|33096394|gb|CF056388.1|CF056388
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCT
EST: gi|211201861|gb|FL394604.1|FL394604
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGNGCTACAACAG                         GCCTCTTGTATTTTTAAATCCCATAAAGATTGATATGCTCTCAAGAATGAT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCC-ATAAAGATTGATATGCTCTCAAGAATGAT
EST: gi|211157896|gb|FL375860.1|FL375860
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211413828|gb|FL421637.1|FL421637
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGNGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|67013371|gb|CO442120.1|CO442120
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211376841|gb|FL401936.1|FL401936
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|21987851|gb|BQ779379.1|BQ779379
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211432185|gb|FL426793.1|FL426793
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211209593|gb|FL396505.1|FL396505
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211008300|gb|FL374933.1|FL374933
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211382707|gb|FL417978.1|FL417978
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211445791|gb|FL052846.1|FL052846
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|211045896|gb|FL416937.1|FL416937
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGNGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|101381939|gb|EB813027.1|EB813027
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
EST: gi|87155878|gb|DY400667.1|DY400667
EST:     AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAG                         GCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT
genomic: AGTACATTTCAGCATTGGAGAAGCTGACAACATTGAGAGTGCTACAACAGgtcttaatta ... ccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaaattgctatatgttgcaataatgacttctagtgtttctcttccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATTCCATTCTTTGACTTCTCTGTCGTGGAGAAGATTTCTGTTGATGCTGCCA
                                     tttctcttccaatttc  CT-rich tract
          tatatgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcttaattaagttctgctatatatgtttgtacataacttgtaaattgctatatgttgcaataatgacttctagtgtttctcttccaatttcagGCCTCTTGTATTTTTAAATCCATAAAGATTGATATGCTCTCAAGAATGATTCCATTCTTTGACTTCTCTGTCGTGGAGAAGATTTCTGTTGATGCTGCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC