Sequence
atgc intronic sequence ATGC exonic sequencegtatggaatgtattctcatatttgttttatgaatcctagtcgctgtaatttattcacatatcttacgcttttgattaatgtttgacagGTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G092776_T04 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os03g02170.1 (Oryza sativa), 3'ss of exon 7
------------------------------gtatggaatg-tattctcata-tttgttttatgaatcctagtcgctgtaat-ttattcacatatcttacgcttttgattaatgtttgacagGTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAA
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gtatagagtggtttttttgacatgttctttttgctgatcactattctagtactttgtcatgtgttaccagctaagagcatccttaaaaatataatttcaagagttgaataatgtctggcagGTACATCCTTCAATGGGAGTCTAAGCATATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|74233198|gb|DT641112.1|DT641112EST: GGAAGGATGGAAGGATAACCTAGAGAA GTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAAT
genomic: GGAAGGATGGAAGGATAACCTAGAGAAgtatggaatg ... tgtttgacagGTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcctagtcgctgtaatttattcacatatcttacgcttttgattaatgtttgacagGTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAA
gattaat putative branch site (score: 3)
taatttattcacatat TA-rich tract