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gtttgtcttactgtccatacaagtctgcaataagatttagttctattataatggcctggtaatggaactgtgtctgcaatactgcagGATAATTCCTATGGAGGGAGAAGCACAGGGAACAAGAAAAAGAGAAAAAGATATGGAGGCCAAGCACAGGGAAGTAGAGGCCCATTAGATGGTAGCTGTG
species | Zea mays |
transcript | GRMZM2G092497_T06 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTCACAGACCGCAGGAGATGGTTACTGTGGCAATCTGTCTGACTATGAG GATAATTCCTATGGAGGGAGAAGCACAGGGAACAAGAAAAAGAGAAAAAGAEST: gi|18450762|gb|BM429040.1|BM429040
genomic: CTTCACAGACCGCAGGAGATGGTTACTGTGGCAATCTGTCTGACTATGAGgtttgtctta ... aatactgcagGATAATTCCTATGGAGGGAGAAGCACAGGGAACAAGAAAAAGAGAAAAAGA
EST: CTTCACAGACCGCAGGAGATGGTTACTGTGGCAATCTGTCTGACTATGAG GATAATTCCTATGGAGGGAGAAGCACAGGGAACAAGAAAAAGAGAAAAAGAEST: gi|18963248|gb|BM660326.1|BM660326
genomic: CTTCACAGACCGCAGGAGATGGTTACTGTGGCAATCTGTCTGACTATGAGgtttgtctta ... aatactgcagGATAATTCCTATGGAGGGAGAAGCACAGGGAACAAGAAAAAGAGAAAAAGA
EST: CTTCACAGACCGCAGGAGATGGTTACTGTGGCAATCTGTCTGACTATGAG GATAATTCCTATGGAGGGAGAAGCACAGGGAACAAGAAAAAGAGAAAAAGAEST: gi|22489975|gb|BU049898.1|BU049898
genomic: CTTCACAGACCGCAGGAGATGGTTACTGTGGCAATCTGTCTGACTATGAGgtttgtctta ... aatactgcagGATAATTCCTATGGAGGGAGAAGCACAGGGAACAAGAAAAAGAGAAAAAGA
EST: CTTCACAGACCGCAGGAGATGGTTACTGTGGCAATCTGTCTGACTATGAG GATAATTCCTATGGAGGGAGAAGCACAGGGAACAAGAAAAAGAGAAAAAGAEST: gi|18648720|gb|BM497539.1|BM497539
genomic: CTTCACAGACCGCAGGAGATGGTTACTGTGGCAATCTGTCTGACTATGAGgtttgtctta ... aatactgcagGATAATTCCTATGGAGGGAGAAGCACAGGGAACAAGAAAAAGAGAAAAAGA
EST: CTTCACAGACCGCAGGAGATGGTTACTGTGGCAATCTGTCTGACTATGAG GATAATTCCTATGGAGGGAGAAGCACAGGGAACAAGAAAAAGAGAAAAAGAEST: gi|211528668|gb|FL445662.1|FL445662
genomic: CTTCACAGACCGCAGGAGATGGTTACTGTGGCAATCTGTCTGACTATGAGgtttgtctta ... aatactgcagGATAATTCCTATGGAGGGAGAAGCACAGGGAACAAGAAAAAGAGAAAAAGA
EST: CTTCACAGACCGCAGGAGATGGTTACTGTGGCAATCTGTCTGACTATGAG GATAATTCCTATGGAGGGAGAAGCACAGGGEST: gi|18655283|gb|BM500088.1|BM500088
genomic: CTTCACAGACCGCAGGAGATGGTTACTGTGGCAATCTGTCTGACTATGAGgtttgtctta ... aatactgcagGATAATTCCTATGGAGGGAGAAGCACAGGG
EST: CTTCACAGACCGCAGGAGATGGTTACTGTGGCAATCTGTCTGACTATGAG GATAATTCCTATGGAGGGAGAAGCACAGGGACCAAGAAAAAGAGAAAAAGA
genomic: CTTCACAGACCGCAGGAGATGGTTACTGTGGCAATCTGTCTGACTATGAGgtttgtctta ... aatactgcagGATAATTCCTATGGAGGGAGAAGCACAGGGAACAAGAAAAAGAGAAAAAGA
agatttagttctattataatggcctggtaatggaactgtgtctgcaatactgcagGATAATTCCTATGGAGGGAGAAGCACAGGGAACAAGAAAAAGAGAAAAAGATATGGAGGCCAAGCACAGGGAAGTAGAGGCCCATTAGATGGTAGCTGTG
tagttctattataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtcttactgtccatacaagtctgcaataagatttagttctattataatggcctggtaatggaactgtgtctgcaatactgcagGATAATTCCTATGGAGGGAGAAGCACAGGGAACAAGAAAAAGAGAAAAAGATATGGAGGCCAAGCACAGGGAAGTAGAGGCCCATTAGATGGTAGCTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG