Sequence
atgc intronic sequence ATGC exonic sequencegtatggtgactagacagtattttgaacattctagccctaccagcaactataaatcaatgtaaccatggttcttttgcctttgattagGACACTGTCGATTCAATTGTTTCTGATATGCTCTTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G092129_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os07g22640.3 (Oryza sativa), 3'ss of exon 1
gtatggtgactagacagtattttgaacattctagccctaccagca-actataaatcaatgtaaccatggttcttttgcctttgattagGACACTGTCGATTCAATTGTTTCTGATATGCTCTTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAG
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-----gtgagatgaaagtattttgaacatttaatttcttctaacagattataaa--atcctgaccatgattcctct-cctttaattagGACACTGTCAATTCAATTGTTTCTGACATGCTCAAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211220819|gb|FL457378.1|FL457378EST: CCATTGGAGSAAGCCTAACTGCAGTTCCTGGACTTTCTGACATGATTGAT GACACTGTCGATTCAATTGTTTCTGATATGCTCTTGTGGCCACACAGGCAT
genomic: CCATTGGAGGAAGCCTAACTGCAGTTCCTGGACTTTCTGACATGATTGATgtatggtgac ... ctttgattagGACACTGTCGATTCAATTGTTTCTGATATGCTCTTGTGGCCACACAGGCAT
EST:
gi|211335355|gb|FL444766.1|FL444766EST: CCATTGGAGGAAGCCTAACTGCAGTTCCTGGACTTTCTGACATGATTGAT GATACTGTCGATTCAATTGTTTCTGATATGCTCTTGTGGCCACACAGGCAT
genomic: CCATTGGAGGAAGCCTAACTGCAGTTCCTGGACTTTCTGACATGATTGATgtatggtgac ... ctttgattagGACACTGTCGATTCAATTGTTTCTGATATGCTCTTGTGGCCACACAGGCAT
EST:
gi|211220820|gb|FL457379.1|FL457379EST: CCATTGGAGGAAGCCTAACTGCAGTTCCTGGACTTTCTGACATGATTGAT GACACTGTCGATTCAATTGTTTGTGATATGCTCTTGTGGCCACACAGGCAT
genomic: CCATTGGAGGAAGCCTAACTGCAGTTCCTGGACTTTCTGACATGATTGATgtatggtgac ... ctttgattagGACACTGTCGATTCAATTGTTTCTGATATGCTCTTGTGGCCACACAGGCAT
EST:
gi|71331353|gb|DR802511.1|DR802511EST: CATTGGAGGAAAGC-TAACTGCAGTTCCTGGACTTTCTGACATGATTGAT GACACTGTCGATTCAATTGTTTCTGATATGCTCTTGTGGC-ACACAGGCAT
genomic: CATTGGAGGAA-GCCTAACTGCAGTTCCTGGACTTTCTGACATGATTGATgtatggtgac ... ctttgattagGACACTGTCGATTCAATTGTTTCTGATATGCTCTTGTGGCCACACAGGCAT
EST:
gi|111145863|gb|EE258112.1|EE258112EST: CCATTGGAGGAAGCCTAACTGCAGTTCCTGGACTTTCTGACATGATTGAT GACACTGTCGATTCAATTGTTTCTGATATGCTCTTGTGGCCACACAGGCAT
genomic: CCATTGGAGGAAGCCTAACTGCAGTTCCTGGACTTTCTGACATGATTGATgtatggtgac ... ctttgattagGACACTGTCGATTCAATTGTTTCTGATATGCTCTTGTGGCCACACAGGCAT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
153CCAGAGCCAAAAATTCAGTACACCCTGAAGGCCATTGGAGGAAGCCTAACTGCAGTTCCTGGACTTTCTGACATGATTGATgtatggtgac ... ctttgattagGACACTGTCGATTCAATTGTTTCTGATATGCTCTTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAG
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
217CCAGAGCCAAAAATTCAGTACACCCTGAAGGCCATTGGAGGAAGCCTAACTGCAGTTCCTGGACTTTCTGACATGATTGATgtatggtgac ... ctttgattagGACACTGTCGATTCAATTGTTTCTGATATGCTCTTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAG
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
220CCAGAGCCAAAAATTCAGTACACCCTGAAGGCCATTGGAGGAAGCCTAACTGCAGTTCCTGGACTTTCTGACATGATTGATgtatggtgac ... ctttgattagGACACTGTCGATTCAATTGTTTCTGATATGCTCTTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAG
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
188CCAGAGCCAAAAATTCAGTACACCCTGAAGGCCATTGGAGGAAGCCTAACTGCAGTTCCTGGACTTTCTGACATGATTGATgtatggtgac ... ctttgattagGACACTGTCGATTCAATTGTTTCTGATATGCTCTTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agccctaccagcaactataaatcaatgtaaccatggttcttttgcctttgattagGACACTGTCGATTCAATTGTTTCTGATATGCTCTTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAG
atgtaac putative branch site (score: 188)
ttcttttgccttt putative PPT
tataaatcaatgtaa TA-rich tract