1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgcgaattaattctgtttgattcagttttctgctaccattttcagatcttatactggtgggtgcatctaaccttttttatgaactggcagCGTGAAGCCGGACGGCCACCCATTCCTAGGAAAAAACCTTTAAAAGATATGGAAAAGGAACCTTTGGTATCAGACCATCCTTTTGTTGACACG
species | Zea mays |
transcript | GRMZM2G091419_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACCCACCAATATTTCACCGTAAGGAGGATACTAACCTAGAGCAGTTGTGG CGTGAAGCCGGACGGCCACCCATTCCTAGGAAAAAACCTTTAAAAGATATGEST: gi|32921418|gb|CF026230.1|CF026230
genomic: TCCCACCAATATTTCACCGTAAGGAGGATACTAACCTAGAGCAGTTGTGGgtgcgaatta ... gaactggcagCGTGAAGCCGGACGGCCACCCATTCCTAGGAAAAAACCTTTAAAAGATATG
EST: AGCAGTTGTGG CGTGAAGCCGGACGGCCACCCATTCCTAGGNNNNNNNCCTTTAAAAGATATEST: gi|32922054|gb|CF026866.1|CF026866
genomic: AGCAGTTGTGGgtgcgaatta ... gaactggcagCGTGAAGCCGGACGGCCACCCATTCCTAGG-AAAAAACCTTTAAAAGATAT
EST: CCCACCAATATTTCACCGTAAGGGAGGATACTAACCTAGAGCAGTTGTGG CGTGAAGCCGGACGGCCACCCATTCCTAGGAAAAAACCTTTAAAAGATATGEST: gi|32921169|gb|CF025981.1|CF025981
genomic: CCCACCAATATTTCACCGTAA-GGAGGATACTAACCTAGAGCAGTTGTGGgtgcgaatta ... gaactggcagCGTGAAGCCGGACGGCCACCCATTCCTAGGAAAAAACCTTTAAAAGATATG
EST: TCCCACCAATATTTCACCGTAAGGAGGATACTAACCTAGAGCAGTTGTGG CGTGAAGCCGGACGGCCACCCATTCCTAGGNNNNNNNCCTTTAAAAGATAT
genomic: TCCCACCAATATTTCACCGTAAGGAGGATACTAACCTAGAGCAGTTGTGGgtgcgaatta ... gaactggcagCGTGAAGCCGGACGGCCACCCATTCCTAGG-AAAAAACCTTTAAAAGATAT
ccattttcagatcttatactggtgggtgcatctaaccttttttatgaactggcagCGTGAAGCCGGACGGCCACCCATTCCTAGGAAAAAACCTTTAAAAGATATGGAAAAGGAACCTTTGGTATCAGACCATCCTTTTGTTGACACG
atctaac putative branch site (score: 52)
ttttttatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgaattaattctgtttgattcagttttctgctaccattttcagatcttatactggtgggtgcatctaaccttttttatgaactggcagCGTGAAGCCGGACGGCCACCCATTCCTAGGAAAAAACCTTTAAAAGATATGGAAAAGGAACCTTTGGTATCAGACCATCCTTTTGTTGACACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA