1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atttttatttttcacagatgacccatgtcatgcttctttgccttcatttgttcgaaaatgttagtcattgattactcactttgatatgctgaatttttagGCTGTCATAAGTGCTGGTATTATCGCTCCTTTGTTGCAACTGCTTCAAGGAGCAGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCCATCTCAAACGCTA
species | Zea mays |
transcript | GRMZM2G091119_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CATGCTGGACGATTTCAAATATTACTGCTGGAAACAAAGATCAGATACAG GCTGTCATAAGTGCTGGTATTATCGCTCCTTTGTTGCAACTGCTTCAAGGAEST: gi|211481132|gb|FL127105.1|FL127105
genomic: CATGCTGGACGATTTCAAATATTACTGCTGGAAACAAAGATCAGATACAGgtaacatact ... gaatttttagGCTGTCATAAGTGCTGGTATTATCGCTCCTTTGTTGCAACTGCTTCAAGGA
EST: CATGCTGGACGATTTCAAATATTACTGCTGGAAACAAAGATCAGATACAG GCTGTCATAAGTGCTGGTATTATCGCTCCTTTGTTGCAACTGCTTCAAGGAEST: gi|60397633|gb|DN230449.1|DN230449
genomic: CATGCTGGACGATTTCAAATATTACTGCTGGAAACAAAGATCAGATACAGgtaacatact ... gaatttttagGCTGTCATAAGTGCTGGTATTATCGCTCCTTTGTTGCAACTGCTTCAAGGA
EST: CATGCTGGACGATTTCAAATATTACTGCTGGAAACAAAGATCAGATACAG GCTGTCATAAGTGCTGGTATTATCGCTCCTTTGTTGCAACTGCTTCAAGGA
genomic: CATGCTGGACGATTTCAAATATTACTGCTGGAAACAAAGATCAGATACAGgtaacatact ... gaatttttagGCTGTCATAAGTGCTGGTATTATCGCTCCTTTGTTGCAACTGCTTCAAGGA
atttgttcgaaaatgttagtcattgattactcactttgatatgctgaatttttagGCTGTCATAAGTGCTGGTATTATCGCTCCTTTGTTGCAACTGCTTCAAGGAGCAGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCCATCTCAAACGCTA
ttttt CT-rich tract
tgaattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttttatttttcacagatgacccatgtcatgcttctttgccttcatttgttcgaaaatgttagtcattgattactcactttgatatgctgaatttttagGCTGTCATAAGTGCTGGTATTATCGCTCCTTTGTTGCAACTGCTTCAAGGAGCAGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCCATCTCAAACGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT