1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agggcgccagcctccctctgtgtgtgtgtgtgtgtttggggtgggggacatactggcatactgccacctactttccctttttctcgtgattattttgtagGAAAAATGGAAAAAGCCACTGCAAGCTAGGGAATTTCAATTACTTACCTGGATATTGCTTCCTTAGAGCAACTATAGCAGTTTTGGGGGTTGATTCTAAG
species | Zea mays |
transcript | GRMZM2G090722_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCGCCAGAGTACTGG GAAAAATGGAAAAAGCCACTGCAAGCTAGGGAATTTCAATTACTTACCTGGEST: gi|22819576|gb|BU499666.1|BU499666
genomic: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCGCCAGAGTACTGGgtacacacta ... tattttgtagGAAAAATGGAAAAAGCCACTGCAAGCTAGGGAATTTCAATTACTTACCTGG
EST: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCGCCAGAGTACTGG GAAAAATGGAAAAAGCCACTGCAAGCTAGGGAATTTCAATTACTTACCTGGEST: gi|21088912|gb|BQ401225.1|BQ401225
genomic: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCGCCAGAGTACTGGgtacacacta ... tattttgtagGAAAAATGGAAAAAGCCACTGCAAGCTAGGGAATTTCAATTACTTACCTGG
EST: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCGCCAGAGTACTGG GAAAAATGGAAAAAGCCACTGCAAGCTAGGGAATTTCAATTACTTACCTGGEST: gi|87155442|gb|DY400231.1|DY400231
genomic: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCGCCAGAGTACTGGgtacacacta ... tattttgtagGAAAAATGGAAAAAGCCACTGCAAGCTAGGGAATTTCAATTACTTACCTGG
EST: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCGCCAGAGTACTGG GAAAAATGGAAAAAGCCACTGCAAGCTAGGGAATTTCAATTACTTACCTGGEST: gi|26457140|gb|CA828723.1|CA828723
genomic: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCGCCAGAGTACTGGgtacacacta ... tattttgtagGAAAAATGGAAAAAGCCACTGCAAGCTAGGGAATTTCAATTACTTACCTGG
EST: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCGCCAGAGTACTGG GAAAAATGGAAAAAGCCACTGCAAGCTAGGGAATTTCAATTACTTACCTGG
genomic: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCGCCAGAGTACTGGgtacacacta ... tattttgtagGAAAAATGGAAAAAGCCACTGCAAGCTAGGGAATTTCAATTACTTACCTGG
ggacatactggcatactgccacctactttccctttttctcgtgattattttgtagGAAAAATGGAAAAAGCCACTGCAAGCTAGGGAATTTCAATTACTTACCTGGATATTGCTTCCTTAGAGCAACTATAGCAGTTTTGGGGGTTGATTCTAAG
ctttccctttttctcg CT-rich tract
attattttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agggcgccagcctccctctgtgtgtgtgtgtgtgtttggggtgggggacatactggcatactgccacctactttccctttttctcgtgattattttgtagGAAAAATGGAAAAAGCCACTGCAAGCTAGGGAATTTCAATTACTTACCTGGATATTGCTTCCTTAGAGCAACTATAGCAGTTTTGGGGGTTGATTCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - cgccagc
- - - - - - - - - - - - - - - tgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - tactggc